These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAATTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCAAGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGGTGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCAGCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTGGCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGCGAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAGTACGTACGTACCTCGCGACCGATTTTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGGTGCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATACAGTAT] [+] EMBL AK062807 [GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAATTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCAAGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGGTGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCAGCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTGGCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGCGAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAGTACGTACGTACCTCGCGACCGATTTTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGGTGCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATACAGTAT] consensusID : consensus_4590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence [AGAGAAAGGCCACAATAGCCTGCTGCCTTCTTCTCCTTGCAGTCGACGTCGCTGCCACAGGAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTCAGGTGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTC-TTGATGAAATGTTGTTGAATGAAAC-TGAATTTTGGGTCTGTACCAGTCG] [+] EMBL AK063211 [AGAGAAAGGCCACAATAGCCTGCTGCCTTCTTCTCCTTGCAGTCGACGTCGCTGCCACAGGAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTCAGGTGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTC TTGATGAAATGTTGTTGAATGAAAC TGAATTTTGGGTCTGTACCAGTCG] [+] EMBL C73855 [ AGGAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTCAGGCGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTCTTTGATGAAATGTTGTTGAATGAAACTTGAATTTTGGGTCTTTACCAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4590#0 GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAA 60 consensus_4590#1 ------------------AGAGAAAGGCCACAATAGCCTGCTG---CCTTCTTCTCCT-- 37 ****** *** *** *** ** * *********** consensus_4590#0 TTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCA 120 consensus_4590#1 -TGCAGTCG--ACGTCGCTGCCA----CAGGAGCAGTTCCGGC---------GGCTG-CG 80 ***** * *** **** * * *** *** * **** ***** * consensus_4590#0 AGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGG 180 consensus_4590#1 TGGATG----GAGGACGACACCGTCGGGATCGACCTCCAGCTTCA--------------- 121 *** * ** * **** ** *** ** * * ** consensus_4590#0 TGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCA 240 consensus_4590#1 --------------GGTGGCGCCGCTGGCG-----ATGGTGCTTGCGGCGGCGGCAGGCG 162 ** **** ** **** *** ** * *************** consensus_4590#0 GCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTG 300 consensus_4590#1 GCGGAGTGGACG---ATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTT 219 *** * * *** *** * * *********************** ****** consensus_4590#0 GCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGC 360 consensus_4590#1 ---ACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCC 276 ***** ******************************************** ** * consensus_4590#0 GAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAG 420 consensus_4590#1 CAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAG 336 *** ** * ******************* ******* *** ************* ** consensus_4590#0 TACGTACGTACCTCGCGACCGATT-TTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGG 479 consensus_4590#1 TACGTACGT-CGTCTTGATGAAATGTTGTTGAA-----TGAAACTGAATTTTGGGTCTG- 389 ********* * ** ** * * ****** ** ** ** * ** consensus_4590#0 TGCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATA 539 consensus_4590#1 TACCAGTCG--------------------------------------------------- 398 * * * * consensus_4590#0 CAGTAT 545 consensus_4590#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||