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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2404 fasta sequence
[ACCCGCGTCCTCTCTCCGTCCGCGGTCCGCCCGAAATTTTCTCCGACGGCGGCGCCTCCGCCCACGATCTCGCGCATCCCTCCCCCTCTCGCCCTCCCAGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCCGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGAAAGTCTCCCTCGCAGCGAATTTATGTTTACCAGTTACATGTTTCAGTTTATAACTACAAGTACTAAATGATGCTGTTCTAGACAATTTATGTTTCAGTATGTTGTACTTCAATACGTTTTTCTGAAAATGTCAAGTAGGAAACATTCCTTCCCTCAGAAATCACAGAGAATTTGTTCGAAAGTGACTGAAAGAGAGAGTTGAAAATAAGAATGAATCTATTCTTGCTGATTATTATTTTACATTGGCCACATGTATGTCAAAAGGGGAAGTATGGGATCAGATAATTCAACATGTATATATTTACAGTATTTTCACTGTTACACTGTACTCCATTATTTTTGTTTATCTGGTGATTGATTATCAACATTGTTGTTGAGAACTACAGAAGGGGAACAAAGGTTTGTCTTTTCTTTTCTTTCTTGAGAGCAGTTTAATTCCAGCAGGGGCTCTAGAAGTTTGCAGCTCGATCTCGTCTGCAGCCCATCAGGTTCTAATTCATGAGTTTTAGATTTGTTTAGTGGAGTATAAAACTTCATTTCTTCAGGCAAAATGATCAAAATAGCCGCATTGTCTTGCTGGTGTACTTAGATAGTTCGATGCACTTCCTGGAACTCTGTAAAAGGGAAACATGTCGTACCAGTACATGATTGTTTTTGTTTATTTCACAACTATTTAAAGAAAGTTGGTGGATTTTCTTCTGTATTTTTTGGTGGAATGAGAACTTTGACCTAGCTGTCTGAAAATATCTTCTCATTGCTTGTGAGTCAAAATAATGGCATTACAGTTCAACCATTTTGGATGCAAAATTTAATTAGATGATAACAGAAATATTCCTGCTCAGGATAACTAAAATTTCATATTATAGTGATAACGATGCTGAAATTTCTTATATCAACGGAGTAAGTAGTGTGCCTGTTGTTTGTCTGTTTTTGCCTTACTTTCCTGAAATATACTCATGCGAAACAACAGATAATTCTGATATATTGCTCTATAATCATAATATGTCTGCACTACCATGGATGAATAAATTGAGTTTAGGTTTTTTATTGCAACCTTGTATCTTGCATGAGTGGTGTTTTTTATTAACAAGATATTTTGGATCCTTTTTGTGCGTGAGAAGAGATACAGCGGCCATATGATTTTCAACTACTCTTATACGGGACTGCTACTCTTATGCACACCATGTTTATTATATATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCA-CCGTATATGTGGGGTTACTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTCTAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAATTACTTTATCTCCTCGGTTAATCTACACAACTTTATTGCCAAAAAAAAAAAAAAAAAACTGAGAC]
[+] EMBL AK068547 [ACCCGCGTCCTCTCTCCGTCCGCGGTCCGCCCGAAATTTTCTCCGACGGCGGCGCCTCCGCCCACGATCTCGCGCATCCCTCCCCCTCTCGCCCTCCCAGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCCGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGAAAGTCTCCCTCGCAGCGAATTTATGTTTACCAGTTACATGTTTCAGTTTATAACTACAAGTACTAAATGATGCTGTTCTAGACAATTTATGTTTCAGTATGTTGTACTTCAATACGTTTTTCTGAAAATGTCAAGTAGGAAACATTCCTTCCCTCAGAAATCACAGAGAATTTGTTCGAAAGTGACTGAAAGAGAGAGTTGAAAATAAGAATGAATCTATTCTTGCTGATTATTATTTTACATTGGCCACATGTATGTCAAAAGGGGAAGTATGGGATCAGATAATTCAACATGTATATATTTACAGTATTTTCACTGTTACACTGTACTCCATTATTTTTGTTTATCTGGTGATTGATTATCAACATTGTTGTTGAGAACTACAGAAGGGGAACAAAGGTTTGTCTTTTCTTTTCTTTCTTGAGAGCAGTTTAATTCCAGCAGGGGCTCTAGAAGTTTGCAGCTCGATCTCGTCTGCAGCCCATCAGGTTCTAATTCATGAGTTTTAGATTTGTTTAGTGGAGTATAAAACTTCATTTCTTCAGGCAAAATGATCAAAATAGCCGCATTGTCTTGCTGGTGTACTTAGATAGTTCGATGCACTTCCTGGAACTCTGTAAAAGGGAAACATGTCGTACCAGTACATGATTGTTTTTGTTTATTTCACAACTATTTAAAGAAAGTTGGTGGATTTTCTTCTGTATTTTTTGGTGGAATGAGAACTTTGACCTAGCTGTCTGAAAATATCTTCTCATTGCTTGTGAGTCAAAATAATGGCATTACAGTTCAACCATTTTGGATGCAAAATTTAATTAGATGATAACAGAAATATTCCTGCTCAGGATAACTAAAATTTCATATTATAGTGATAACGATGCTGAAATTTCTTATATCAACGGAGTAAGTAGTGTGCCTGTTGTTTGTCTGTTTTTGCCTTACTTTCCTGAAATATACTCATGCGAAACAACAGATAATTCTGATATATTGCTCTATAATCATAATATGTCTGCACTACCATGGATGAATAAATTGAGTTTAGGTTTTTTATTGCAACCTTGTATCTTGCATGAGTGGTGTTTTTTATTAACAAGATATTTTGGATCCTTTTTGTGCGTGAGAAGAGATACAGCGGCCATATGATTTTCAACTACTCTTATACGGGACTGCTACTCTTATGCACACCATGTTTATTATATATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCA CCGTATATGTGGGGTTACTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTCTAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAATTACTTTATCTCCT ]
[-] EMBL CF326370 [ TATATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCACCCGTATATGTGGGGTTATTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTATAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAATTACTTTATCTCCTCGGTTAATCTACACAACTTTATTGCCAAAAAAAAAAAAAAAAAACTGAGAC]
consensusID : consensus_4599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[CGGCACGAGCGCGCATCCCTCCCCCNCTCGCCCTCCCNGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCTGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTANGGGCT]
[+] EMBL AA753096 [CGGCACGAGCGCGCATCCCTCCCCCNCTCGCCCTCCCNGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCTGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTANGGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4599#0 ACCCGCGTCCTCTCTCCGTCCGCGGTCCGCCCGAAATTTTCTCCGACGGCGGCGCCTCCG 60
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 CCCACGATCTCGCGCATCCCTCCCCCTCTCGCCCTCCCAGGACCGCACCTCACCGCCGCC 120
consensus_4599#1 -CGGCACGAGCGCGCATCCCTCCCCCNCTCGCCCTCCCNGGACCGCACCTCACCGCCGCC 59
* * **************** *********** *********************
consensus_4599#0 GCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCAC 180
consensus_4599#1 GCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCAC 119
************************************************************
consensus_4599#0 CCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCCGAGGCG 240
consensus_4599#1 CCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCTGAGGCG 179
***************************************************** ******
consensus_4599#0 TGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTC 300
consensus_4599#1 TGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTC 239
************************************************************
consensus_4599#0 AAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAAT 360
consensus_4599#1 AAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAAT 299
************************************************************
consensus_4599#0 GCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTC 420
consensus_4599#1 GCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTC 359
************************************************************
consensus_4599#0 GCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTT 480
consensus_4599#1 GCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTT 419
************************************************************
consensus_4599#0 GTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCC 540
consensus_4599#1 GTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCC 479
************************************************************
consensus_4599#0 AGGAAAGTCTCCCTCGCAGCGAATTTATGTTTACCAGTTACATGTTTCAGTTTATAACTA 600
consensus_4599#1 AGGTTC-TATATTCCGTAACTCGCC-GCGTTTGGTGTCTACGT---TTGGACTATATCTT 534
*** * * ** * * **** *** * * * **** **
consensus_4599#0 CAAGTACTAAATGATGCTGTTCTAGACAATTTATGTTTCAGTATGTTGTACTTCAATACG 660
consensus_4599#1 ACTGATTTACATTANGGGCT---------------------------------------- 554
* ** ** * * *
consensus_4599#0 TTTTTCTGAAAATGTCAAGTAGGAAACATTCCTTCCCTCAGAAATCACAGAGAATTTGTT 720
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 CGAAAGTGACTGAAAGAGAGAGTTGAAAATAAGAATGAATCTATTCTTGCTGATTATTAT 780
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TTTACATTGGCCACATGTATGTCAAAAGGGGAAGTATGGGATCAGATAATTCAACATGTA 840
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TATATTTACAGTATTTTCACTGTTACACTGTACTCCATTATTTTTGTTTATCTGGTGATT 900
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GATTATCAACATTGTTGTTGAGAACTACAGAAGGGGAACAAAGGTTTGTCTTTTCTTTTC 960
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TTTCTTGAGAGCAGTTTAATTCCAGCAGGGGCTCTAGAAGTTTGCAGCTCGATCTCGTCT 1020
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GCAGCCCATCAGGTTCTAATTCATGAGTTTTAGATTTGTTTAGTGGAGTATAAAACTTCA 1080
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TTTCTTCAGGCAAAATGATCAAAATAGCCGCATTGTCTTGCTGGTGTACTTAGATAGTTC 1140
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GATGCACTTCCTGGAACTCTGTAAAAGGGAAACATGTCGTACCAGTACATGATTGTTTTT 1200
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GTTTATTTCACAACTATTTAAAGAAAGTTGGTGGATTTTCTTCTGTATTTTTTGGTGGAA 1260
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TGAGAACTTTGACCTAGCTGTCTGAAAATATCTTCTCATTGCTTGTGAGTCAAAATAATG 1320
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GCATTACAGTTCAACCATTTTGGATGCAAAATTTAATTAGATGATAACAGAAATATTCCT 1380
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GCTCAGGATAACTAAAATTTCATATTATAGTGATAACGATGCTGAAATTTCTTATATCAA 1440
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 CGGAGTAAGTAGTGTGCCTGTTGTTTGTCTGTTTTTGCCTTACTTTCCTGAAATATACTC 1500
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATGCGAAACAACAGATAATTCTGATATATTGCTCTATAATCATAATATGTCTGCACTACC 1560
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATGGATGAATAAATTGAGTTTAGGTTTTTTATTGCAACCTTGTATCTTGCATGAGTGGTG 1620
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TTTTTTATTAACAAGATATTTTGGATCCTTTTTGTGCGTGAGAAGAGATACAGCGGCCAT 1680
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATGATTTTCAACTACTCTTATACGGGACTGCTACTCTTATGCACACCATGTTTATTATAT 1740
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCACCGT 1800
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATATGTGGGGTTACTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTA 1860
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTT 1920
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAAT 1980
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 AACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTG 2040
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTT 2100
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTAT 2160
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTA 2220
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 GGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTCTAAAGATAGGTACTGTGGC 2280
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 ATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAAT 2340
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 TACTTTATCTCCTCGGTTAATCTACACAACTTTATTGCCAAAAAAAAAAAAAAAAAACTG 2400
consensus_4599#1 ------------------------------------------------------------
consensus_4599#0 AGAC 2404
consensus_4599#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||