cluster # 4601

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Oryza sativa
cluster # 4601 cluster # 4601 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4601#0 length = 464 sequences # 2

consensus_4601#1 length = 417 sequences # 1

consensusID : consensus_4601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 464
fasta sequence

                              [CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT]

[+] EMBL CF306331             [CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT]
[-] EMBL OSR13731A            [                                                                                                               cnAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCAGAAAGCTCATCCTCAGTNTCCTCCAGTAACCTTCCACAGAATG                    ]




>consensus_4601#0
CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTA
ATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGA
CAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATA
CAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCT
GCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGA
TCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGC
TGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTT
CCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT

consensusID : consensus_4601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TTGTNTTTTTTGTTTTTTTTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGANTCGNTTTNATCCACTCAGAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATG]

[-] EMBL AU031739             [TTGTNTTTTTTGTTTTTTTTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGANTCGNTTTNATCCACTCAGAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATG]




>consensus_4601#1
TTGTNTTTTTTGTTTTTTTTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCAT
GTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAA
TTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTG
AGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGC
ACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGA
CAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGANTCG
NTTTNATCCACTCAGAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4601#0      CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTA 60
consensus_4601#1      ----------TTGTNTTTTTTGTTTTTTT----------------TTGCTTTCAACCGTA 34
                                ** * ****** *******                ***************

consensus_4601#0      ATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGA 120
consensus_4601#1      ATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGA 94
                      ************************************************************

consensus_4601#0      CAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATA 180
consensus_4601#1      CAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATA 154
                      ************************************************************

consensus_4601#0      CAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCT 240
consensus_4601#1      CAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCT 214
                      ************************************************************

consensus_4601#0      GCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGA 300
consensus_4601#1      GCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGA 274
                      ************************************************************

consensus_4601#0      TCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGC 360
consensus_4601#1      TCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGC 334
                      ************************************************************

consensus_4601#0      TGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTT 420
consensus_4601#1      TGACATTTCCTGATTCTGCGGAN-TCGNTTTNATCCACTCAGAAAGCTCATCCTCAGTTT 393
                      **********************  *** *** ********* ******************

consensus_4601#0      CCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT 464
consensus_4601#1      CCTCCAGTAACCTTCCACAGAATG-------------------- 417
                      ************************