These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1776 fasta sequence [TCCGGAATCCTCTCGACCGTCGGGAAACTTGAGCCTTCAGCTTCCTCCTTCCTCCCCCATCGCCAATGGCATCCCCTTCCCTCGCTGCAGCAAATACACTTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGTTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAGAAGTCTATACGGATTATTCAGTAACAGGGATTCCTGGAGATGGAAGATGCTTATTCCGCTCTGTGATTCATGGGGCATGCATTAGGGCAGGAAGACCCATACCAAATGAAGATCTTCAGAGAAAGCTAGCTGACGAATTGAGGGCAATGGTTGCTGATGAATTTGTTAAGAGGCGGGAAGAATCGGAATGGTTTATTGAGGGAGATTTCGACACATATGTGTCCCATATTAGGCATCCACATGTGTGGGGCGGTGAACCAGAATTATTCATGGCTTCACATGTTCTTGAGATGCCAATAACGGTTTACATGCATGATGAAGATGCTGGTGGTTTAATAACAATTGCTGAATATGGCCAACAATATGGAAAAGAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTTCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAA-GGCATATGTTTCTCGATGTGAATCTGCTGAAAGAGCCGAAACTGAATTGTTGTTATCCACACTCTAGTAATGCTTCTGGTAAAACGTGAGACAAGGCAGCATAAGCTTATGGATGATTGAATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCTGTAACTTACTGCAATATCCTGCATACTAATGTGATGA] [+] EMBL AK073328 [TCCGGAATCCTCTCGACCGTCGGGAAACTTGAGCCTTCAGCTTCCTCCTTCCTCCCCCATCGCCAATGGCATCCCCTTCCCTCGCTGCAGCAAATACACTTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGTTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAGAAGTCTATACGGATTATTCAGTAACAGGGATTCCTGGAGATGGAAGATGCTTATTCCGCTCTGTGATTCATGGGGCATGCATTAGGGCAGGAAGACCCATACCAAATGAAGATCTTCAGAGAAAGCTAGCTGACGAATTGAGGGCAATGGTTGCTGATGAATTTGTTAAGAGGCGGGAAGAATCGGAATGGTTTATTGAGGGAGATTTCGACACATATGTGTCCCATATTAGGCATCCACATGTGTGGGGCGGTGAACCAGAATTATTCATGGCTTCACATGTTCTTGAGATGCCAATAACGGTTTACATGCATGATGAAGATGCTGGTGGTTTAATAACAATTGCTGAATATGGCCAACAATATGGAAAAGAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTTCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAA GGCATATGTTTCTCGATGTGAATCTGCTGAAAGAGCCGAAACTGAATTGTTGTTATCCACACTCTAGTAATGCTTCTGGTAAAACGTGAGACAAGGCAGCATAAGCTTATGGATGATTGAATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCTGTAACTTACTGCAATATCCTGCATACTAATGTGATGA] [+] EMBL C73490 [ ATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTNCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAAGGGCATATGTTTCTCGATGTGAATCTGCTGAAGGAGCCGAAACTGGATNGTTGTTATCCACACTCTAGTAATGCTTCTGGGTAAACGTGAGACAAGGCAGCATAAGCNAATGGGTG ] consensusID : consensus_4602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [GACGAGACAAGGGGGGCTGCAGCAAATACACCTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGNTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAAAAAGTCTATACGGATTATTCAGTAACAGGGGA] [+] EMBL CA766788 [GACGAGACAAGGGGGGCTGCAGCAAATACACCTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGNTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAAAAAGTCTATACGGATTATTCAGTAACAGGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4602#0 TCCGGAATCCTCTCGACCGTCGGGAAACTTGAGCCTTCAGCTTCCTCCTTCCTCCCCCAT 60 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 CGCCAATGGCATCCCCTTCCCTCGCTGCAGCAAATACACTTCGCGAGATCCTCCTCCTCC 120 consensus_4602#1 ----GACGAGA----CAAGGGGGGCTGCAGCAAATACACCTCGCGAGATCCTCCTCCTCC 52 * * * * **************** ******************** consensus_4602#0 TCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCAC 180 consensus_4602#1 TCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCAC 112 ************************************************************ consensus_4602#0 TTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCA 240 consensus_4602#1 TTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCA 172 ************************************************************ consensus_4602#0 GGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATT 300 consensus_4602#1 GGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATT 232 ************************************************************ consensus_4602#0 CTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCG 360 consensus_4602#1 CTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCG 292 ************************************************************ consensus_4602#0 GATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTC 420 consensus_4602#1 GATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTC 352 ************************************************************ consensus_4602#0 CCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACG 480 consensus_4602#1 CCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACG 412 ************************************************************ consensus_4602#0 CTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAA 540 consensus_4602#1 CTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAA 472 ************************************************************ consensus_4602#0 TATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTT 600 consensus_4602#1 TATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTT 532 ************************************************************ consensus_4602#0 CCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCG 660 consensus_4602#1 CCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCG 592 ************************************************************ consensus_4602#0 TGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTAC 720 consensus_4602#1 TGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTAC 652 ************************************************************ consensus_4602#0 AACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGTTCCTGT 780 consensus_4602#1 AACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGNTCCTGT 712 ***************************************************** ****** consensus_4602#0 GGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAGAA-GTCT 839 consensus_4602#1 GGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAAAAAGTCT 772 **************************************************** ** **** consensus_4602#0 ATACGGATTATTCAGTAACAGGGATTCCTGGAGATGGAAGATGCTTATTCCGCTCTGTGA 899 consensus_4602#1 ATACGGATTATTCAGTAACAGGGGA----------------------------------- 797 *********************** consensus_4602#0 TTCATGGGGCATGCATTAGGGCAGGAAGACCCATACCAAATGAAGATCTTCAGAGAAAGC 959 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TAGCTGACGAATTGAGGGCAATGGTTGCTGATGAATTTGTTAAGAGGCGGGAAGAATCGG 1019 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 AATGGTTTATTGAGGGAGATTTCGACACATATGTGTCCCATATTAGGCATCCACATGTGT 1079 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 GGGGCGGTGAACCAGAATTATTCATGGCTTCACATGTTCTTGAGATGCCAATAACGGTTT 1139 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 ACATGCATGATGAAGATGCTGGTGGTTTAATAACAATTGCTGAATATGGCCAACAATATG 1199 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 GAAAAGAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGA 1259 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAA 1319 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 ATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGT 1379 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGA 1439 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 CATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTC 1499 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TTCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGAT 1559 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 GACAAGGCATATGTTTCTCGATGTGAATCTGCTGAAAGAGCCGAAACTGAATTGTTGTTA 1619 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TCCACACTCTAGTAATGCTTCTGGTAAAACGTGAGACAAGGCAGCATAAGCTTATGGATG 1679 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 ATTGAATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCT 1739 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 GTAACTTACTGCAATATCCTGCATACTAATGTGATGA 1776 consensus_4602#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||