These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 821 fasta sequence [GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCCTTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACCGTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCATATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGCTTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAATTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCAATACATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCGAGCATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNGAGAAGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTTTTGGNAAAAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA] [+] EMBL CA766480 [GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCCTTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACCGTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCATATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGCTTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAATTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCAATACATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCGAGCATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNGAGAAGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTTTTGGNAAAAAATT ] [-] EMBL CA762202 [ AAGGCAGAAGACCGTGCAGAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCATATGCATTGCTAGTGTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGCTTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAATTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCA TTTGA TCCAGAATAAGATGCATCAA TTTGCAATCAATACATG TGG CCTATCATCAT GGGTTACTCGCTCTTGTGTAGTTGTGTACT GTTCGAGCATAGC TGTAA TTTGTTGACT CCGCATG CACA TTCC GGTTAAAAAT GTGTGAGATGTA TTTATT TTTAGTAA TGTA TAATTT GATA CT GGAT CCCAA TTATTTGG AATAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA] consensusID : consensus_4605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CTAGGCTCACTCATTTATCTATTACATTGAATGACTTACCCACATGTAAAATGCAAAGTTATCTGCTTGTTGAACATAGCTGAATAGATTTTTTTCTGCCTTCCACAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAGCATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTGATCCAGAATAAGATGCATCATTTCAATCAATACATGTGGCCTATCATCATGGGTTACTCGCTCTTGTGTAGTTGTGTACTGTTCTAGCATAGCTGTAATTTGTTGACTCCGCATGCACATTCCGGTTAAAAATGTGTGAGATGTATTTATTCTTAGTAATGTATAATTTGATACTGGATCCCAATTATTTGGAATAAATTGTGCAGTTTAAGCTCTCAAAAA] [+] EMBL BI813022 [CTAGGCTCACTCATTTATCTATTACATTGAATGACTTACCCACATGTAAAATGCAAAGTTATCTGCTTGTTGAACATAGCTGAATAGATTTTTTTCTGCCTTCCACAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAGCATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTGATCCAGAATAAGATGCATCATTTCAATCAATACATGTGGCCTATCATCATGGGTTACTCGCTCTTGTGTAGTTGTGTACTGTTCTAGCATAGCTGTAATTTGTTGACTCCGCATGCACATTCCGGTTAAAAATGTGTGAGATGTATTTATTCTTAGTAATGTATAATTTGATACTGGATCCCAATTATTTGGAATAAATTGTGCAGTTTAAGCTCTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4605#0 GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCC 60 consensus_4605#1 ------------------------------------------------------------ consensus_4605#0 TTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACC 120 consensus_4605#1 ------------------------------------------------------------ consensus_4605#0 GTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCA 180 consensus_4605#1 ------------------------------------------------------------ consensus_4605#0 TATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGC 240 consensus_4605#1 ------------------------------------------------------------ consensus_4605#0 TTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAA--ATTTGTGAAGC 298 consensus_4605#1 -----------------------------------------CTAGGCTCACTCATTTATC 19 **** * * * * * consensus_4605#0 TCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGG 358 consensus_4605#1 T-ATTACATTGAATGACT-TACCCACATGTAAAAT---GCAAAGTTATCTGCTTGTTGAA 74 * * * * ** * ** *** * ** * * * ** *** **** consensus_4605#0 AATTGATGATCCATATGAATCACCAGTGAATAGTG-AGATAGTAATTAAGATGGTAGATG 417 consensus_4605#1 CATAGCTGA---ATA-GATTTTTTTCTGCCTTCCACAGATAGTAATTAAGATGGTAGATG 130 ** * *** *** ** * ** * ************************ consensus_4605#0 GGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACG 477 consensus_4605#1 GGGAATGTCCTTCACCCAAGC--ATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACG 188 ******************* ************************************* consensus_4605#0 GATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCAC 537 consensus_4605#1 GATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCAC 248 ************************************************************ consensus_4605#0 TCGTGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCA 597 consensus_4605#1 TCGTGGACACTAGTGTGATCCATTTGA--TCCAGAATAAGATGCATCA---TTTCAATCA 303 ************************* ******************* ** ****** consensus_4605#0 ATACATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCG 657 consensus_4605#1 ATACATGTGG--CCTATCATCATGGG-TTACTCGCTCTTGTGTAGTTGTGTACTG-TTCT 359 ******* * ************** ************* **** ** * **** *** consensus_4605#0 AGCATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNG 717 consensus_4605#1 AGCATAGCT--GTAATTTGTTGACTCC-GCATGC-ACATTCC--GGTTAAAAATG-TGTG 412 ******** * * ************ ***** ***** * *********** * * consensus_4605#0 AGAAGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTT 777 consensus_4605#1 AGATGTATTTA--TTCTTAGTAATGTA--TAATTTG-ATACT--GGATCCC--AATTATT 463 *** * **** * * ** ** * ******* * ** **** ** **** ** consensus_4605#0 TTGGNAAAAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA 821 consensus_4605#1 T--GGAATAAATTGTGCAGTTTAAGCTCTCAAAAA--------- 496 * * ** *************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||