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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4605 cluster # 4605       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4605#0 length = 821 sequences # 2  
consensus_4605#1 length = 496 sequences # 1  

consensusID : consensus_4605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 821
fasta sequence
                              [GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCCTTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACCGTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCATATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGCTTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAATTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCAATACATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCGAGCATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNGAGAAGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTTTTGGNAAAAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA]

[+] EMBL CA766480             [GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCCTTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACCGTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCATATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGCTTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAATTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCAATACATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCGAGCATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNGAGAAGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTTTTGGNAAAAAATT                               ]
[-] EMBL CA762202             [                                                                                                           AAGGCAGAAGACCGTGCAGAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCATATGCATTGCTAGTGTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGCTTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAATTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCA TTTGA TCCAGAATAAGATGCATCAA TTTGCAATCAATACATG TGG CCTATCATCAT GGGTTACTCGCTCTTGTGTAGTTGTGTACT GTTCGAGCATAGC TGTAA TTTGTTGACT CCGCATG CACA TTCC GGTTAAAAAT GTGTGAGATGTA TTTATT TTTAGTAA TGTA TAATTT GATA CT GGAT CCCAA  TTATTTGG AATAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA]


>consensus_4605#0 GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCC TTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACC GTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCA TATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGC TTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAAATTTGTGAAGCTC GTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGGAA TTGATGATCCATATGAATCACCAGTGAATAGTGAGATAGTAATTAAGATGGTAGATGGGG AATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGAT ATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCG TGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCAATA CATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCGAGC ATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNGAGA AGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTTTTG GNAAAAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA



consensusID : consensus_4605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence
                              [CTAGGCTCACTCATTTATCTATTACATTGAATGACTTACCCACATGTAAAATGCAAAGTTATCTGCTTGTTGAACATAGCTGAATAGATTTTTTTCTGCCTTCCACAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAGCATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTGATCCAGAATAAGATGCATCATTTCAATCAATACATGTGGCCTATCATCATGGGTTACTCGCTCTTGTGTAGTTGTGTACTGTTCTAGCATAGCTGTAATTTGTTGACTCCGCATGCACATTCCGGTTAAAAATGTGTGAGATGTATTTATTCTTAGTAATGTATAATTTGATACTGGATCCCAATTATTTGGAATAAATTGTGCAGTTTAAGCTCTCAAAAA]

[+] EMBL BI813022             [CTAGGCTCACTCATTTATCTATTACATTGAATGACTTACCCACATGTAAAATGCAAAGTTATCTGCTTGTTGAACATAGCTGAATAGATTTTTTTCTGCCTTCCACAGATAGTAATTAAGATGGTAGATGGGGAATGTCCTTCACCCAAGCATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCACTCGTGGACACTAGTGTGATCCATTTGATCCAGAATAAGATGCATCATTTCAATCAATACATGTGGCCTATCATCATGGGTTACTCGCTCTTGTGTAGTTGTGTACTGTTCTAGCATAGCTGTAATTTGTTGACTCCGCATGCACATTCCGGTTAAAAATGTGTGAGATGTATTTATTCTTAGTAATGTATAATTTGATACTGGATCCCAATTATTTGGAATAAATTGTGCAGTTTAAGCTCTCAAAAA]


>consensus_4605#1 CTAGGCTCACTCATTTATCTATTACATTGAATGACTTACCCACATGTAAAATGCAAAGTT ATCTGCTTGTTGAACATAGCTGAATAGATTTTTTTCTGCCTTCCACAGATAGTAATTAAG ATGGTAGATGGGGAATGTCCTTCACCCAAGCATGGCCCAGCATGTTCTGTGCTACCTTGA AGAGAACGGATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTG TCCTCCACTCGTGGACACTAGTGTGATCCATTTGATCCAGAATAAGATGCATCATTTCAA TCAATACATGTGGCCTATCATCATGGGTTACTCGCTCTTGTGTAGTTGTGTACTGTTCTA GCATAGCTGTAATTTGTTGACTCCGCATGCACATTCCGGTTAAAAATGTGTGAGATGTAT TTATTCTTAGTAATGTATAATTTGATACTGGATCCCAATTATTTGGAATAAATTGTGCAG TTTAAGCTCTCAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4605#0      GCACTCTTGCATGTGCACTGAGTCGGGAGTTGCATTGCAGCGGCCACCTTACTTATGTCC 60
consensus_4605#1      ------------------------------------------------------------
                                                                                  

consensus_4605#0      TTGATGGTGACAACCTAAGGCATGGCCTAAATCGAGATCTAAGCTTCAAGGCAGAAGACC 120
consensus_4605#1      ------------------------------------------------------------
                                                                                  

consensus_4605#0      GTGCAAAAAATATACGAAGAGTTGGAGAAGTGGCAAAGCTATTCGCAGATGCTGGAATCA 180
consensus_4605#1      ------------------------------------------------------------
                                                                                  

consensus_4605#0      TATGCATTGCTAGTTTGATATCTCCATATAGGAGAGACCGTGATGCGTGCCGTGTGCTGC 240
consensus_4605#1      ------------------------------------------------------------
                                                                                  

consensus_4605#0      TTCCAGAGTCTAGATTTATTGAAGTATTTATGGATTTGCCACTAGAA--ATTTGTGAAGC 298
consensus_4605#1      -----------------------------------------CTAGGCTCACTCATTTATC 19
                                                               ****    * *  *  * *

consensus_4605#0      TCGTGATCCTAAAGGTCTATACAAGCTTGCACGCTCTGGAAAGATTAAAGGCTTCACTGG 358
consensus_4605#1      T-ATTACATTGAATGACT-TACCCACATGTAAAAT---GCAAAGTTATCTGCTTGTTGAA 74
                      *  * *   * ** * ** ***   * ** *   *   * **  ***   ****      

consensus_4605#0      AATTGATGATCCATATGAATCACCAGTGAATAGTG-AGATAGTAATTAAGATGGTAGATG 417
consensus_4605#1      CATAGCTGA---ATA-GATTTTTTTCTGCCTTCCACAGATAGTAATTAAGATGGTAGATG 130
                       ** * ***   *** ** *      **  *     ************************

consensus_4605#0      GGGAATGTCCTTCACCCAAAGCAATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACG 477
consensus_4605#1      GGGAATGTCCTTCACCCAAGC--ATGGCCCAGCATGTTCTGTGCTACCTTGAAGAGAACG 188
                      *******************    *************************************

consensus_4605#0      GATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCAC 537
consensus_4605#1      GATATTTGCAAGCTTAGCATATATTTGTGAAGATTGATTTGATTCCTGAGTGTCCTCCAC 248
                      ************************************************************

consensus_4605#0      TCGTGGACACTAGTGTGATCCATTTTGATTCCAGAATAAGATGCATCAATTTTGCAATCA 597
consensus_4605#1      TCGTGGACACTAGTGTGATCCATTTGA--TCCAGAATAAGATGCATCA---TTTCAATCA 303
                      *************************    *******************   ** ******

consensus_4605#0      ATACATGNNGGCCCTATCATCATGGGGTTACTCGCTCTTGNGTAGNTGGGGACTGGTTCG 657
consensus_4605#1      ATACATGTGG--CCTATCATCATGGG-TTACTCGCTCTTGTGTAGTTGTGTACTG-TTCT 359
                      *******  *  ************** ************* **** ** * **** *** 

consensus_4605#0      AGCATAGCNTGGAATTTTGTTGACTCCCNCATGCCACATTTCCGGGTTAAAAATGGNGNG 717
consensus_4605#1      AGCATAGCT--GTAATTTGTTGACTCC-GCATGC-ACATTCC--GGTTAAAAATG-TGTG 412
                      ********   * * ************  ***** ***** *  ***********  * *

consensus_4605#0      AGAAGNATTTTATTCCNTAAAAANGGGATTAATTTGGANACCTGGGATNCCCAAATTTTT 777
consensus_4605#1      AGATGTATTTA--TTCTTAGTAATGTA--TAATTTG-ATACT--GGATCCC--AATTATT 463
                      *** * ****   * * **  ** *    ******* * **   **** **  **** **

consensus_4605#0      TTGGNAAAAAATTGTGCAGTTTAAGCTCTCAAAAAAAAAAAAAA 821
consensus_4605#1      T--GGAATAAATTGTGCAGTTTAAGCTCTCAAAAA--------- 496
                      *  * ** ***************************         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)