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Oryza sativa
cluster # 4614 cluster # 4614       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4614#0 length = 1585 sequences # 2  
consensus_4614#1 length = 411 sequences # 1  

consensusID : consensus_4614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1585
fasta sequence
                              [CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGATATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGAACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTGGCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAACAACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGACACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTCAGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTGACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGTAGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATCGTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCTACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTCATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTGGGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAATGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTG]

[+] EMBL D43041               [CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGATATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGAACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK105525             [                                                              tgACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTTGGGAACACATGTATCATGCATTTATTTGTGGTTCTTGCCAAGTGCATCTAGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGATCCATTACAGTCCTGTCATGTAGTAGAAGAAATGCTGGCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAACAACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGACACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTCAGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTGACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGTAGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATCGTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCTACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTCATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTGGGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAATGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTG]


>consensus_4614#0 CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGAT ATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGA ACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCT TGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTG GCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAAC AACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCG TGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCAT CCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGC TAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGAC ACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTC AGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTG ACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGT AGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATC GTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCT ACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGG TGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGAC CTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTC ATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTG GGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAA TGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAG CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT TCAGGGCAATGTGTTGCTTTCTCTG



consensusID : consensus_4614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence
                              [CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA]

[+] EMBL CF326658             [CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA]


>consensus_4614#1 CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTA CGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCC GCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTC GCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGC CATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATG TTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAA AGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4614#0      CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGAT 60
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      ATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGA 120
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      ACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCT 180
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      TGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTG 240
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      GCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAAC 300
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      AACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCG 360
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      TGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCAT 420
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      CCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGC 480
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      TAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGAC 540
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      ACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTC 600
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      AGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTG 660
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      ACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGT 720
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      AGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATC 780
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      GTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCT 840
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      ACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGG 900
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      TGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGAC 960
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      CTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTC 1020
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      ATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTG 1080
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      GGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAA 1140
consensus_4614#1      ------------------------------------------------------------
                                                                                  

consensus_4614#0      TGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAG 1200
consensus_4614#1      ---------------------------------------CGCCCGCAA-----CGGCGAG 16
                                                             *  **  **       * ***

consensus_4614#0      CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG 1260
consensus_4614#1      CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG 76
                      ************************************************************

consensus_4614#0      ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG 1320
consensus_4614#1      ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG 136
                      ************************************************************

consensus_4614#0      TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC 1380
consensus_4614#1      TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC 196
                      ************************************************************

consensus_4614#0      ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG 1440
consensus_4614#1      ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG 256
                      ************************************************************

consensus_4614#0      AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC 1500
consensus_4614#1      AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC 316
                      ************************************************************

consensus_4614#0      CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT 1560
consensus_4614#1      CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT 376
                      ************************************************************

consensus_4614#0      TCAGGGCAATGTGTTGCTTTCTCTG---------- 1585
consensus_4614#1      TCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA 411
                      *************************          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)