These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1585 fasta sequence [CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGATATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGAACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTGGCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAACAACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGACACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTCAGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTGACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGTAGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATCGTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCTACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTCATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTGGGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAATGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTG] [+] EMBL D43041 [CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGATATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGAACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTA ] [+] EMBL AK105525 [ tgACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTTGGGAACACATGTATCATGCATTTATTTGTGGTTCTTGCCAAGTGCATCTAGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGATCCATTACAGTCCTGTCATGTAGTAGAAGAAATGCTGGCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAACAACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGACACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTCAGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTGACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGTAGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATCGTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCTACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTCATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTGGGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAATGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTG] consensusID : consensus_4614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA] [+] EMBL CF326658 [CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4614#0 CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGAT 60 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 ATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGA 120 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 ACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCT 180 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 TGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTG 240 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 GCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAAC 300 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 AACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCG 360 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 TGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCAT 420 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 CCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGC 480 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 TAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGAC 540 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 ACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTC 600 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 AGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTG 660 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 ACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGT 720 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 AGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATC 780 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 GTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCT 840 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 ACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGG 900 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 TGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGAC 960 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 CTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTC 1020 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 ATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTG 1080 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 GGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAA 1140 consensus_4614#1 ------------------------------------------------------------ consensus_4614#0 TGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAG 1200 consensus_4614#1 ---------------------------------------CGCCCGCAA-----CGGCGAG 16 * ** ** * *** consensus_4614#0 CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG 1260 consensus_4614#1 CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG 76 ************************************************************ consensus_4614#0 ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG 1320 consensus_4614#1 ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG 136 ************************************************************ consensus_4614#0 TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC 1380 consensus_4614#1 TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC 196 ************************************************************ consensus_4614#0 ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG 1440 consensus_4614#1 ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG 256 ************************************************************ consensus_4614#0 AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC 1500 consensus_4614#1 AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC 316 ************************************************************ consensus_4614#0 CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT 1560 consensus_4614#1 CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT 376 ************************************************************ consensus_4614#0 TCAGGGCAATGTGTTGCTTTCTCTG---------- 1585 consensus_4614#1 TCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA 411 ************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||