These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATGAGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCCGCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTCAGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGAAAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCATCTGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCGACACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCCTGTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCGTAGATTTGAGTTGTCAGGGTGTACA] [+] EMBL BI305778 [GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATGAGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCCGCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTCAGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGG ] [+] EMBL CF326758 [ CGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATGAGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGCAGCGCCGCGGCGTCGCCGCGCCACAGCGACGCCGGAGACGACGACGCCGCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTCAGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGAAAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCATCTGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCGACACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCCTGTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCGTAGATTTGAGTTGTCAGGGTGTACA] consensusID : consensus_4619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGTAGCGCCGCGGTGTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCCGTGTTGGTCGACGGGTCGTTGTGGCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTTTGTACGCATGTGTGCGTCTTGTTCGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTTTTTCATTGTTCCTTTTCTT] [+] EMBL CA757020 [GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGTAGCGCCGCGGTGTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCCGTGTTGGTCGACGGGTCGTTGTGGCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTTTGTACGCATGTGTGCGTCTTGTTCGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTTTTTCATTGTTCCTTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4619#0 GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATG 60 consensus_4619#1 ------------------------------------------------------------ consensus_4619#0 AGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAG 120 consensus_4619#1 -----------------------GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAG 37 ************************************* consensus_4619#0 ATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCC 180 consensus_4619#1 ATCGATGGCCGTAGCGCCGCGGTGTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCC 97 *********** ********** ** * ** ****** **** *** ****** ***** consensus_4619#0 GCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTC 240 consensus_4619#1 GTGTTGGTCGACGGGTCGTTGTGGCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTT 157 * ** ** *********** * ****** ************* *** *** ** * ** consensus_4619#0 AGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTC-ACGGAT 299 consensus_4619#1 TGTACGCATGTGTGCGTCTTGTTCGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTT 217 * ***** ******* ** * ** * *** *** * *** * * * consensus_4619#0 GGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGA 359 consensus_4619#1 TTTCATTGTTCCTTTTCTT----------------------------------------- 236 ** ** * consensus_4619#0 AAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCAT 419 consensus_4619#1 ------------------------------------------------------------ consensus_4619#0 CTGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCG 479 consensus_4619#1 ------------------------------------------------------------ consensus_4619#0 ACACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCC 539 consensus_4619#1 ------------------------------------------------------------ consensus_4619#0 TGTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCG 599 consensus_4619#1 ------------------------------------------------------------ consensus_4619#0 TAGATTTGAGTTGTCAGGGTGTACA 624 consensus_4619#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||