cluster # 4621

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Oryza sativa
cluster # 4621 cluster # 4621 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4621#0 length = 1306 sequences # 2

consensus_4621#1 length = 468 sequences # 1

consensusID : consensus_4621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1306
fasta sequence

                              [GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGCGAGGACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTGAGAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGCTGGATGAGCTGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGAGGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGGACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCA-TTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGG--AGGAGGCT-GGTGACCA-TGACTCAGAGAGAACACATGGAACGCTCCCATGTAGCAGGGATGATGAACCTGTTCATGTGCCATCCGACTTCGGCTCATCAAAATCCCAAGATAACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAGCCGAATGCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCCGAGCCCAGAGAGGGAGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCGGACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGGCGACGGCGAGGCCGCGCAACGACGTGCAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATCGAGAGGAGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCGTCAGTTTTGAGCAGCGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAGTGATAGTGTAGTAGAGTATTTGTAGAGAAATTGGAATAAGATTTTGCTCCCGTGGCTGTGTTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCCATCTGTCAATGTTATATATG]

[+] EMBL AK064670             [GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGCGAGGACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTGAGAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGCTGGATGAGCTGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGAGGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGGACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCA TTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGG  AGGAGGCT GGTGACCA TGACTCAGAGAGAACACATGGAACGCTCCCATGTAGCAGGGATGATGAACCTGTTCATGTGCCATCCGACTTCGGCTCATCAAAATCCCAAGATAACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAGCCGAATGCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCCGAGCCCAGAGAGGGAGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCGGACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGGCGACGGCGAGGCCGCGCAACGACGTGCAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATCGAGAGGAGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCGTCAGTTTTGAGCAGCGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAGTGATAGTGTAGTAGAGTATTTGTAGAGAAATTGGAATAAGATTTTGCTCCCGTGGCTGTGTTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCCATCTGTCAATGTTATATATG]
[+] EMBL C72413               [                                                                                                                                                                                                                                                                                               caGCTGGATGAGCTGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGAGGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGTACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCATTTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGGGAANGAGGCTGGGTNACCATTGACTCAGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_4621#0
GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCC
CAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAG
CTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGCGAGG
ACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTGAGAGGGAGGCTGCTTGCAGAGA
GGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGCTGGATGAGC
TGGAGAAGAAGCTCTCCGACGAGGTCAAGATCAGGAACAAGGCGGAGAGGAGGCTCAGGA
GGGCCATAAAGAAGCTGGAGTCCCTCAAGATTTTGGATGTGGAGCTCTCGGACAGCTCCA
TCGGGTCACTCTCCTCCAATAGCTGCTCCGGTCACCGCGCGCCGGAGACGGAGGCGGACG
TGAACAATCCTGGCTCCTCGGCTGGTTCATGCACTCAGGTGAACTCCTCCCAGGAAGGGA
GCTGGTGCTCTGTTGTGTCCGAGCAATCACCATCTGTTCATTGCAAGGAGGAGGAGGAGA
ATGGCTTGGACCCTGAAGATGCTAAGAACTGCGGCTCTGGGGAGGAGGCTGGTGACCATG
ACTCAGAGAGAACACATGGAACGCTCCCATGTAGCAGGGATGATGAACCTGTTCATGTGC
CATCCGACTTCGGCTCATCAAAATCCCAAGATAACCAACGCGACGAGGACGACGACAGGC
TAGCGCTGGTGCTGGTAGACCCGCAGCCGAATGCAGAAACAGGCAACGAAGACTATATGC
GTATCGATATCCAAGCACGGAAGGCTCAGGCCGAGCCCAGAGAGGGAGACGGCGAAATGG
AGGAGGCGAATGAGCTCGCGATCGTGCTCGCGGACCCGCAACCCGAGCCCAAGGCGGAGC
CTGCGGCGACGGCGAGGCCGCGCAACGACGTGCAGTCCGTGCTCCTCGCGCTGCGGCAGG
TGAAGGAGCAGCTGCGGTACACGATCGAGAGGAGGTCGGAGCTCGTCGCCCACCAGGAGC
TTTGCGGCCACTGTTGAGAGCGCTGCACCTCGTCAGTTTTGAGCAGCGGCTCTTGCTAGT
ATTTGCCACGATACTACTAGAGTTCTTGACAGTGATAGTGTAGTAGAGTATTTGTAGAGA
AATTGGAATAAGATTTTGCTCCCGTGGCTGTGTTACATACACGGGAGACAAACTGAGATA
ATTCAGTTGTGTACAATTTGTTCTCCATCTGTCAATGTTATATATG

consensusID : consensus_4621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTNANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGACAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATTTTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT]

[+] EMBL OSS14551A            [GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACATATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGAAACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGCAGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTNANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCACTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGACAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATTTTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT]




>consensus_4621#1
GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACAT
ATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGA
AACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGC
AGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTN
ANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCA
CTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGA
CAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATT
TTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4621#0      ----------------------GGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACAT 38
consensus_4621#1      GCACCCCAAGCCCAAAAGCAGAGGCGCATGCAGCGGCAGAAGCAGCCACAGCCGTCACAT 60
                                            **************************************

consensus_4621#0      ATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGA 98
consensus_4621#1      ATCGTACGCCCATCCCTGACCCCAAATCTTGGTCCCTTGGATACTACTACTACCACCAGA 120
                      ************************************************************

consensus_4621#0      AACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGC 158
consensus_4621#1      AACGTCGACGAGAGAAGGGAAGCTAAGCTAGGAGAAATGGCTGCCACAGCCATGCAATGC 180
                      ************************************************************

consensus_4621#0      AGGGGAGGTGAGCGCAGCGAGGACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTG 218
consensus_4621#1      AGGGGAGGTGAGCGCAGTGNGNACGGCGGTGGCGGTGGCATGAGGACAGTGGAGTGCCTN 240
                      ***************** * * ************************************* 

consensus_4621#0      AGAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCA 278
consensus_4621#1      ANAGGGAGGCTGCTTGCAGAGAGGGTAGCATCCAAGGCTGCCAAGGAGGAGGCTGATTCA 300
                      * **********************************************************

consensus_4621#0      CTCGCCAAAAGGCTGGATGAGCTGGAGAAGAAGCTCT-CCGACGAGGTCAAGATCAGGAA 337
consensus_4621#1      CTCGCCAAAAGGTTGGATGAGTTGGAGAAGAAGCTNTTCCGACGGGGTCAAGGTCAGGGA 360
                      ************ ******** ************* * ****** ******* ***** *

consensus_4621#0      CAAGGCGGAGA--GGAGGCTCAGGAGGG-CCAT-AAAGAAGCT-GGAGTCCCTCAAGATT 392
consensus_4621#1      CAAGGCGGAGGAGGNGGGTTCAAGAGGGGCCATTAAAGAAGCTTGGAGTCCCTCAAGATT 420
                      **********   *  ** *** ***** **** ********* ****************

consensus_4621#0      TTGGATGTGGAGCTCTCGGACAGCTCCATCGGGTCACTCTCCTCCAATAGCTGCTCCGGT 452
consensus_4621#1      TTTGGTTTTGGGCTNTTGGACAAGTTCATCGGGTAATTTTCCTCCAAT------------ 468
                      ** * * * * *** * *****  * ******** * * *********            

consensus_4621#0      CACCGCGCGCCGGAGACGGAGGCGGACGTGAACAATCCTGGCTCCTCGGCTGGTTCATGC 512
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      ACTCAGGTGAACTCCTCCCAGGAAGGGAGCTGGTGCTCTGTTGTGTCCGAGCAATCACCA 572
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      TCTGTTCATTGCAAGGAGGAGGAGGAGAATGGCTTGGACCCTGAAGATGCTAAGAACTGC 632
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GGCTCTGGGGAGGAGGCTGGTGACCATGACTCAGAGAGAACACATGGAACGCTCCCATGT 692
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      AGCAGGGATGATGAACCTGTTCATGTGCCATCCGACTTCGGCTCATCAAAATCCCAAGAT 752
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      AACCAACGCGACGAGGACGACGACAGGCTAGCGCTGGTGCTGGTAGACCCGCAGCCGAAT 812
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GCAGAAACAGGCAACGAAGACTATATGCGTATCGATATCCAAGCACGGAAGGCTCAGGCC 872
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GAGCCCAGAGAGGGAGACGGCGAAATGGAGGAGGCGAATGAGCTCGCGATCGTGCTCGCG 932
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GACCCGCAACCCGAGCCCAAGGCGGAGCCTGCGGCGACGGCGAGGCCGCGCAACGACGTG 992
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      CAGTCCGTGCTCCTCGCGCTGCGGCAGGTGAAGGAGCAGCTGCGGTACACGATCGAGAGG 1052
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      AGGTCGGAGCTCGTCGCCCACCAGGAGCTTTGCGGCCACTGTTGAGAGCGCTGCACCTCG 1112
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      TCAGTTTTGAGCAGCGGCTCTTGCTAGTATTTGCCACGATACTACTAGAGTTCTTGACAG 1172
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      TGATAGTGTAGTAGAGTATTTGTAGAGAAATTGGAATAAGATTTTGCTCCCGTGGCTGTG 1232
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      TTACATACACGGGAGACAAACTGAGATAATTCAGTTGTGTACAATTTGTTCTCCATCTGT 1292
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      CAATGTTATATATG 1306
consensus_4621#1      --------------