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Oryza sativa
cluster # 4625 cluster # 4625       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4625#0 length = 1205 sequences # 1  
consensus_4625#1 length = 952 sequences # 2  

consensusID : consensus_4625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1205
fasta sequence
                              [CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]

[+] EMBL AK103641             [CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]


>consensus_4625#0 CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCAT CTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGC TCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCA CGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCA AGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACG ACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG TAAAT



consensusID : consensus_4625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 952
fasta sequence
                              [GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAG-TTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]

[+] EMBL AK071111             [GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAG TTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]
[+] EMBL C72226               [               AAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGGGGC TTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGANCTTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGG CGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGTTAAGNTCAAGGAGCAGTTTCGGTTCCAAGGGCCTAAATGTGNAAGACCTTG GATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_4625#1 GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCA GGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGA CGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCT GGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGA CGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGG GCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTT CGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCT CGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCG GCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGC GGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGT GCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGG CCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGT CATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGAT GGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGAT TAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGA TGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4625#0      CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCAT 60
consensus_4625#1      ------------------------------------------------------------
                                                                                  

consensus_4625#0      CTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGC 120
consensus_4625#1      ------------------------------------------------------------
                                                                                  

consensus_4625#0      TCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCA 180
consensus_4625#1      ------------------------------------------------------------
                                                                                  

consensus_4625#0      CGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCA 240
consensus_4625#1      ------------------------------------------------------------
                                                                                  

consensus_4625#0      AGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACG 300
consensus_4625#1      -----------GTAATTGAC--AGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAA 47
                                   **  ***    * *  *  * *         *    ***  *  *  

consensus_4625#0      ACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC 360
consensus_4625#1      ATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC 107
                      * *  *       ***********************************************

consensus_4625#0      CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG 420
consensus_4625#1      CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG 167
                      ************************************************************

consensus_4625#0      CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC 480
consensus_4625#1      CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC 227
                      ************************************************************

consensus_4625#0      TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC 540
consensus_4625#1      TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC 287
                      ************************************************************

consensus_4625#0      AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC 600
consensus_4625#1      AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC 347
                      ************************************************************

consensus_4625#0      TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA 660
consensus_4625#1      TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA 407
                      ************************************************************

consensus_4625#0      ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT 720
consensus_4625#1      ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT 467
                      ************************************************************

consensus_4625#0      CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC 780
consensus_4625#1      CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC 527
                      ************************************************************

consensus_4625#0      GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA 840
consensus_4625#1      GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA 587
                      ************************************************************

consensus_4625#0      CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG 900
consensus_4625#1      CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG 647
                      ************************************************************

consensus_4625#0      CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG 960
consensus_4625#1      CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG 707
                      ************************************************************

consensus_4625#0      CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT 1020
consensus_4625#1      CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT 767
                      ************************************************************

consensus_4625#0      CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA 1080
consensus_4625#1      CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA 827
                      ************************************************************

consensus_4625#0      ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT 1140
consensus_4625#1      ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT 887
                      ************************************************************

consensus_4625#0      CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG 1200
consensus_4625#1      CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG 947
                      ************************************************************

consensus_4625#0      TAAAT 1205
consensus_4625#1      TAAAT 952
                      *****




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)