|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1205 fasta sequence
[CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]
[+] EMBL AK103641 [CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]
consensusID : consensus_4625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 952 fasta sequence
[GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAG-TTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]
[+] EMBL AK071111 [GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAG TTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT]
[+] EMBL C72226 [ AAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGGGGC TTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGANCTTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGG CGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGTTAAGNTCAAGGAGCAGTTTCGGTTCCAAGGGCCTAAATGTGNAAGACCTTG GATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4625#0 CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCAT 60
consensus_4625#1 ------------------------------------------------------------
consensus_4625#0 CTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGC 120
consensus_4625#1 ------------------------------------------------------------
consensus_4625#0 TCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCA 180
consensus_4625#1 ------------------------------------------------------------
consensus_4625#0 CGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCA 240
consensus_4625#1 ------------------------------------------------------------
consensus_4625#0 AGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACG 300
consensus_4625#1 -----------GTAATTGAC--AGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAA 47
** *** * * * * * * *** * *
consensus_4625#0 ACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC 360
consensus_4625#1 ATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC 107
* * * ***********************************************
consensus_4625#0 CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG 420
consensus_4625#1 CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG 167
************************************************************
consensus_4625#0 CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC 480
consensus_4625#1 CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC 227
************************************************************
consensus_4625#0 TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC 540
consensus_4625#1 TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC 287
************************************************************
consensus_4625#0 AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC 600
consensus_4625#1 AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC 347
************************************************************
consensus_4625#0 TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA 660
consensus_4625#1 TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA 407
************************************************************
consensus_4625#0 ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT 720
consensus_4625#1 ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT 467
************************************************************
consensus_4625#0 CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC 780
consensus_4625#1 CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC 527
************************************************************
consensus_4625#0 GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA 840
consensus_4625#1 GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA 587
************************************************************
consensus_4625#0 CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG 900
consensus_4625#1 CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG 647
************************************************************
consensus_4625#0 CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG 960
consensus_4625#1 CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG 707
************************************************************
consensus_4625#0 CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT 1020
consensus_4625#1 CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT 767
************************************************************
consensus_4625#0 CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA 1080
consensus_4625#1 CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA 827
************************************************************
consensus_4625#0 ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT 1140
consensus_4625#1 ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT 887
************************************************************
consensus_4625#0 CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG 1200
consensus_4625#1 CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG 947
************************************************************
consensus_4625#0 TAAAT 1205
consensus_4625#1 TAAAT 952
*****
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||