These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1205 fasta sequence [CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT] [+] EMBL AK103641 [CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCATCTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGCTCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCACGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCAAGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACGACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT] consensusID : consensus_4625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 952 fasta sequence [GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAG-TTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT] [+] EMBL AK071111 [GTAATTGACAGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAG TTCGGTTCCAAGGGCCTAAATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCTCCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACCGGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCACCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGGCGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGGCGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGTCCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGAACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGTCATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGGTAAAT] [+] EMBL C72226 [ AAATGTGGATGGAGAACTTACCCAAGTTTAAAATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGCCGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCGCCAAGGGGGC TTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGCTGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGANCTTTTGGCAAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGG CGTGGCCAACCTACCGTCTTCTTTCGCGGATTTCGTTAAGNTCAAGGAGCAGTTTCGGTTCCAAGGGCCTAAATGTGNAAGACCTTG GATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4625#0 CGAGAGATCGAATTCGGTTCTCGTCTCGATCATCAGTTTGGCCTGTCGATCTCTGTCCAT 60 consensus_4625#1 ------------------------------------------------------------ consensus_4625#0 CTCTGACGACGCCGACGGCCATGCAGCAGCTGCTCGCGATGAAGCTGATCCTGACGACGC 120 consensus_4625#1 ------------------------------------------------------------ consensus_4625#0 TCGTCGTCGCCGTGCTGGCGCTGTCCGCCGGCACGGCCACGGCCACCTGCGACACGCTCA 180 consensus_4625#1 ------------------------------------------------------------ consensus_4625#0 CGGTCGGGCACTACCGGCAGTCGTGCCGCGCCGCCGAGACCATCGTGCGCGACACCGTCA 240 consensus_4625#1 ------------------------------------------------------------ consensus_4625#0 AGCTCTACTTCTCAAAGGACCAGACCGTCACCGCGCCGCTGCTCCGCCTCCACTTCCACG 300 consensus_4625#1 -----------GTAATTGAC--AGCTGCAAATGTGGATGGAGAACTTACCCAAGTTTAAA 47 ** *** * * * * * * *** * * consensus_4625#0 ACTGCTTCGTCAGGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC 360 consensus_4625#1 ATTATTATTGGCAGGGATGTGACGGATCGGTGTTGCTGAACGCGACGGCGGCGAGCGGGC 107 * * * *********************************************** consensus_4625#0 CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG 420 consensus_4625#1 CGGCGGAGAAGGACGCGATGCCGAACCAGAGCCTGGACGGGTTCTACGTCATCGACGCCG 167 ************************************************************ consensus_4625#0 CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC 480 consensus_4625#1 CCAAGGCGGCGCTGGAGAAGGAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTGGCGC 227 ************************************************************ consensus_4625#0 TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC 540 consensus_4625#1 TGGCGGCCAGAGACGCTGTCTCCATGGCTGCCGGGAACATCAATGGCGCGAGCCTTTGGC 287 ************************************************************ consensus_4625#0 AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC 600 consensus_4625#1 AAGTCCCGACGGGGCGGCTCGACGGCCGCGTGTCGTCGGCGGCGGAGGCCGTGGCCAACC 347 ************************************************************ consensus_4625#0 TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA 660 consensus_4625#1 TACCGTCTTCTTTCGCGGATTTCGCTAAGCTCAAGGAGCAGTTCGGTTCCAAGGGCCTAA 407 ************************************************************ consensus_4625#0 ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT 720 consensus_4625#1 ATGTGCAAGACCTCGCGATCCTATCAGGTGCTCACGCCATAGGCAATTCACACTGCGTCT 467 ************************************************************ consensus_4625#0 CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC 780 consensus_4625#1 CCTTCGCCAAGCGGCTCTACAACTTCACCGGCAAGGGCGACGCCGACCCGACGCTCGACC 527 ************************************************************ consensus_4625#0 GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA 840 consensus_4625#1 GGGCGTACGCCGCGGCGGTCCTCCGCGCCGCCTGCCCGCCGCGGTTCGACAACGCGACCA 587 ************************************************************ consensus_4625#0 CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG 900 consensus_4625#1 CCGTCGAGATGGTGCCGGGGAGCTCGACGACGTTCGACACCGACTACTACAGGCTGGTGG 647 ************************************************************ consensus_4625#0 CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG 960 consensus_4625#1 CGAGCCGGAGGGGCCTCTTCCACTCCGACCAGGCGTTGCTCCAGGACAGGGAGGCGGCGG 707 ************************************************************ consensus_4625#0 CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT 1020 consensus_4625#1 CGACGGTGCGCGTCATGGCGAGGTCGAGCAGGCAGGCGTTCTTCCGGCGATTCGGGGTGT 767 ************************************************************ consensus_4625#0 CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA 1080 consensus_4625#1 CCATGGTGAGGATGGGCAATGTCGGGGTCCTGACGGGAGCCGCAGGAGAGATCAGGAAGA 827 ************************************************************ consensus_4625#0 ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT 1140 consensus_4625#1 ACTGTGCTCTGATTAATTGATGGGCAGAGATTTGATCTTTGATATAAGTTATTACTAAGT 887 ************************************************************ consensus_4625#0 CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG 1200 consensus_4625#1 CATGTACTAATGATGTTCTATTGTTTGGTGTCTAATTAAGTTATTACTACTACTACAAGG 947 ************************************************************ consensus_4625#0 TAAAT 1205 consensus_4625#1 TAAAT 952 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||