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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1294 fasta sequence
[AGCCATAGCCTCCTCTCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCGGCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCGCGCAAGGGCGACGGGTCGCTGAGCCTCCTCGCCGTCGGCGACTGGGGGCGCCGCGGCGCGTACAACCAGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCGTCATCTCCACCGGCGACAACTTCTACAAGAACGGCCTCACCGGCGTCGATGATAAGGCCTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACACCGTTCTTGGCAACCATGACTACAGGGGCGACGCCCTCGCCCAGCTGAGCCCTGTTCTTCGCAAGGTCGACAGCCGCTGGATCTGCATCAAGTCCTTCGTCGTTAGCGCAGAGATCGCGGATTTCTTCTTCGTGGACACGACGCCGTTCGTGCTCAAGTACTGGACTGATCCCAAGAACAGCAAGTACGACTGGAGAGGGGTTTCTCCCCGTGAAACCTACATTGCAAATGTCCTCAAGGATCTGGAGGATGCACTGGAGCAGTCCAAAGCGCCGTGGAAGATCGTGGTCGGACACCACGCCATCAGGAGCGTCAGCCAGCACGGCGATACCAAGGAGCTCCTGGAGCATCTCCTTCCAATCCTCAAAGCACATGGAGTTGATCTCTACCTCAACGGCCACGACCACTGCCTCGAGCACATCAGCAGCAGGGACAGCAAGATTCAGTACCTGACGAGCGGGCCGGGTCGAAGGCGTGGCGCGGGGTGCAGACGGCGAACACGGACAAGGTGGAGTTCTTCTACGACGGGCAGGGATTCATGTCGCTGCGGCTGACGGCGGCGGAGGCTAGCCTCGCCTTCTACGACGTCGCCGGCAAGATCCTCCACACATGGATGGTCGCCAAACCAGCCACCGGGTACTGAGATAGTGAGATTGCGAGCAGCTAGCTAGCTCTGTGATGTACTTGATGGTGTAATGGCAAGCGGTGTGTGGTTTCAACCTAAACCCCCGAGGTGTTCGACGGTGAAACTTGGGTTTTGGTGCTATTGCTATGTCAACGGGGATGAGTTTTCTCATGATTGATTGAAATCTTATTCGTCTAATTCCTCCTTCGGGACTTGTTCGGTTTGAATGGAATTGAAGAAAATTGAGAGGGAATA]
[+] EMBL AK069660 [AGCCATAGCCTCCTCTCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCGGCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCGCGCAAGGGCGACGGGTCGCTGAGCCTCCTCGCCGTCGGCGACTGGGGGCGCCGCGGCGCGTACAACCAGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCGTCATCTCCACCGGCGACAACTTCTACAAGAACGGCCTCACCGGCGTCGATGATAAGGCCTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACACCGTTCTTGGCAACCATGACTACAGGGGCGACGCCCTCGCCCAGCTGAGCCCTGTTCTTCGCAAGGTCGACAGCCGCTGGATCTGCATCAAGTCCTTCGTCGTTAGCGCAGAGATCGCGGATTTCTTCTTCGTGGACACGACGCCGTTCGTGCTCAAGTACTGGACTGATCCCAAGAACAGCAAGTACGACTGGAGAGGGGTTTCTCCCCGTGAAACCTACATTGCAAATGTCCTCAAGGATCTGGAGGATGCACTGGAGCAGTCCAAAGCGCCGTGGAAGATCGTGGTCGGACACCACGCCATCAGGAGCGTCAGCCAGCACGGCGATACCAAGGAGCTCCTGGAGCATCTCCTTCCAATCCTCAAAGCACATGGAGTTGATCTCTACCTCAACGGCCACGACCACTGCCTCGAGCACATCAGCAGCAGGGACAGCAAGATTCAGTACCTGACGAGCGGGCCGGGTCGAAGGCGTGGCGCGGGGTGCAGACGGCGAACACGGACAAGGTGGAGTTCTTCTACGACGGGCAGGGATTCATGTCGCTGCGGCTGACGGCGGCGGAGGCTAGCCTCGCCTTCTACGACGTCGCCGGCAAGATCCTCCACACATGGATGGTCGCCAAACCAGCCACCGGGTACTGAGATAGTGAGATTGCGAGCAGCTAGCTAGCTCTGTGATGTACTTGATGGTGTAATGGCAAGCGGTGTGTGGTTTCAACCTAAACCCCCGAGGTGTTCGACGGTGAAACTTGGGTTTTGGTGCTATTGCTATGTCAACGGGGATGAGTTTTCTCATGATTGATTGAAATCTTATTCGTCTAATTCCTCCTTCGGGACTTGTTCGGTTTGAATGGAATTGAAGAAAATTGAGAGGGAATA]
[+] EMBL AU162330 [ TCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCGGCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCG GCAAGGGCGACGGGTCGCTGAGCCTCCTCGCCGTCGG GACTGGGGGCGCCGCGGCGCGTACAACCAGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCGTCATCTCCACCGGCGACAACTTCTACAAGAACGGCCTCANCGGCGTCGATGATAAGGCCTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACACCGTTCTTGGCAACCATGACTACAGGGGCGANG CCTCGCCCAGCTGAGCCCTG ]
consensusID : consensus_4631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[ACCAAGTGGAGGACCGCCGCGCGCGCCGGCGATCGACTGCTCGATCGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGNCGGCGGAGATCCNCGGCTGGAGCACCCGCACAAGGGCGACGGGTCGCTGAGCCTCCTCNCCGTCGGCGACTGGGGGCGCCCGCCGGCGCGTACAACCCAGTCGATGGTCCCCGCGCCAGGTAATCGATTGATTTTGATTGATTAGTTGCCGGTGATGATTTCGTTTTGCTAAATGTGGCTAGTTAATTATTAATGGCCTAATTACTGAAATACCTGTAATCAATGTGGTTAAGGTAGAAGAAATCCAGAAAACGAGGAGTTGTTTTGGAGGCTATGTGGAATTGTAAATTAAGCTCATGTTTAGTGCTCTCTTGTTTTTTTAAGGAAGAAAACAGAGTGTAGTATCTAAAAAAAAAA]
[+] EMBL BI806600 [ACCAAGTGGAGGACCGCCGCGCGCGCCGGCGATCGACTGCTCGATCGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGNCGGCGGAGATCCNCGGCTGGAGCACCCGCACAAGGGCGACGGGTCGCTGAGCCTCCTCNCCGTCGGCGACTGGGGGCGCCCGCCGGCGCGTACAACCCAGTCGATGGTCCCCGCGCCAGGTAATCGATTGATTTTGATTGATTAGTTGCCGGTGATGATTTCGTTTTGCTAAATGTGGCTAGTTAATTATTAATGGCCTAATTACTGAAATACCTGTAATCAATGTGGTTAAGGTAGAAGAAATCCAGAAAACGAGGAGTTGTTTTGGAGGCTATGTGGAATTGTAAATTAAGCTCATGTTTAGTGCTCTCTTGTTTTTTTAAGGAAGAAAACAGAGTGTAGTATCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4631#0 AGCCATAGCCTCCTCTCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCG 60
consensus_4631#1 -------------------------------ACCAAGTGGAGGACCGCCGCGCGCG-CCG 28
* *********** ** ** *** ***
consensus_4631#0 GCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCG 120
consensus_4631#1 GCGATCGA-CTGCTCGATCG-CCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCG 86
******** *********** ***************************************
consensus_4631#0 TCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCGCGCAAGG 180
consensus_4631#1 TCGCCGTCGCTGCGGCAACTGCGNCGGCGGAGAT-CCNCGGCTGGAGCACCCGCACAAGG 145
*********************** ********** ** *** ************ *****
consensus_4631#0 GCGACGGGTCGCTGAGCCTCCTCGCCGTCGGCGACTGGGGGCGCCG--CGGCGCGTACAA 238
consensus_4631#1 GCGACGGGTCGCTGAGCCTCCTCNCCGTCGGCGACTGGGGGCGCCCGCCGGCGCGTACAA 205
*********************** ********************* ************
consensus_4631#0 CC-AGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCG 297
consensus_4631#1 CCCAGTCGATGGTCCCCGCGCCA-------------GGTAATCGATTGATTTTGATTGAT 252
** *********** ****** ** * *** ** * ** *
consensus_4631#0 TCATCTCCACCGGCGACAAC-TTCTACAAGAACGGCCTCACCGGC-GTCGATGATAAGGC 355
consensus_4631#1 TAGTTGCCGGTGATGATTTCGTTTTGCTAAATGTGGCTAGTTAATTATTAATGGCCTAAT 312
* * ** * ** * ** * * * * * ** * ***
consensus_4631#0 CTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACAC 415
consensus_4631#1 TACTGAAATACCTGTAATCAATGTGGTTAAGGTAGAAGAAATCCAGAAAACGAGGAGTTG 372
*** * * * * * * * * * **** ** * **
consensus_4631#0 CGTTCTTGGCAACCATGACTACAGGGGCGACGCCCTCGCCCAGCTGAGCCCTGTTCTTCG 475
consensus_4631#1 TTTTGGAGGCTAT-GTGGAATTGTAAATTAAGCTCATGTTTAG-TGCTCTCTTGTTTTTT 430
** *** * ** * ** * * ** ** * ** * **
consensus_4631#0 CAAGGTCGACAGC----CGCTGGATCTGCATCAAGTCCTTCGTCGTTAGCGCAGAGATCG 531
consensus_4631#1 TAAGGAAGAAAACAGAGTGTAGTATCTAAAAAAAAAA----------------------- 467
**** ** * * * * **** * **
consensus_4631#0 CGGATTTCTTCTTCGTGGACACGACGCCGTTCGTGCTCAAGTACTGGACTGATCCCAAGA 591
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 ACAGCAAGTACGACTGGAGAGGGGTTTCTCCCCGTGAAACCTACATTGCAAATGTCCTCA 651
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 AGGATCTGGAGGATGCACTGGAGCAGTCCAAAGCGCCGTGGAAGATCGTGGTCGGACACC 711
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 ACGCCATCAGGAGCGTCAGCCAGCACGGCGATACCAAGGAGCTCCTGGAGCATCTCCTTC 771
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 CAATCCTCAAAGCACATGGAGTTGATCTCTACCTCAACGGCCACGACCACTGCCTCGAGC 831
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 ACATCAGCAGCAGGGACAGCAAGATTCAGTACCTGACGAGCGGGCCGGGTCGAAGGCGTG 891
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 GCGCGGGGTGCAGACGGCGAACACGGACAAGGTGGAGTTCTTCTACGACGGGCAGGGATT 951
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 CATGTCGCTGCGGCTGACGGCGGCGGAGGCTAGCCTCGCCTTCTACGACGTCGCCGGCAA 1011
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 GATCCTCCACACATGGATGGTCGCCAAACCAGCCACCGGGTACTGAGATAGTGAGATTGC 1071
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 GAGCAGCTAGCTAGCTCTGTGATGTACTTGATGGTGTAATGGCAAGCGGTGTGTGGTTTC 1131
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 AACCTAAACCCCCGAGGTGTTCGACGGTGAAACTTGGGTTTTGGTGCTATTGCTATGTCA 1191
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 ACGGGGATGAGTTTTCTCATGATTGATTGAAATCTTATTCGTCTAATTCCTCCTTCGGGA 1251
consensus_4631#1 ------------------------------------------------------------
consensus_4631#0 CTTGTTCGGTTTGAATGGAATTGAAGAAAATTGAGAGGGAATA 1294
consensus_4631#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||