cluster # 464

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Oryza sativa
cluster # 464 cluster # 464 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_464#0 length = 1324 sequences # 1

consensus_464#1 length = 196 sequences # 1

consensusID : consensus_464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1324
fasta sequence

                              [ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCTGCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCCGCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCCACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGGCACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTCCGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCGCAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAGAGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAGCGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACGATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATCCCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGACATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTAATTCACCGCAAAACAGAAACATCAGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACGCATGAACAATTTTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGTCTATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGCTCATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAATTCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAAAAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCAAGTCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTTGTGCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTTATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTACGGATAT]

[+] EMBL AK106255             [ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCTGCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCCGCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCCACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGGCACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTCCGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCGCAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAGAGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAGCGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACGATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATCCCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGACATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTAATTCACCGCAAAACAGAAACATCAGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACGCATGAACAATTTTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGTCTATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGCTCATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAATTCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAAAAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCAAGTCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTTGTGCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTTATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTACGGATAT]




>consensus_464#0
ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCT
GCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCC
GCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCC
ACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGG
CACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTC
CGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCG
CAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAG
AGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAG
CGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACG
ATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATC
CCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGAC
ATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTG
GTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTAATTCACCGCAAAACAGAAACATCA
GATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACGCATGAACAATTTT
GATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGTCT
ATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGCTC
ATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAATTC
AAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAAAA
GGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCAAG
TCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTTGT
GCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTTAT
TTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTACGG
ATAT

consensusID : consensus_464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence

                              [AATCAGCAATTTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTATATCTACCGCAAACAGAAACTACAGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACTGCATGAACAATTTTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAGGGGGTCGTTAAACAGT]

[+] EMBL AA750999             [AATCAGCAATTTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTATATCTACCGCAAACAGAAACTACAGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACTGCATGAACAATTTTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAGGGGGTCGTTAAACAGT]




>consensus_464#1
AATCAGCAATTTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTAT
ATCTACCGCAAACAGAAACTACAGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAG
AGGTGAAACTGCATGAACAATTTTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAG
GGGGTCGTTAAACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_464#0      ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCT 60
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      GCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCC 120
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      GCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCC 180
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      ACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGG 240
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      CACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTC 300
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      CGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCG 360
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      CAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAG 420
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      AGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAG 480
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      CGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACG 540
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      ATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATC 600
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      CCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGAC 660
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      ATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTG 720
consensus_464#1      -------------------------------------AATCAGCAATTTTCATCTTTTTG 23
                                                          ********** ************

consensus_464#0      GTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTA-ATTCACCGCAAAACAGAAACATC 779
consensus_464#1      GTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTATATCTACCGCAAA-CAGAAACTAC 82
                     ************************************ **  ******** *******  *

consensus_464#0      AGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAAC-GCATGAACAATT 838
consensus_464#1      AGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACTGCATGAACAATT 142
                     **    ***************************************** ************

consensus_464#0      TTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGT 898
consensus_464#1      TTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAGGGGGTCGTTAAACAGT------ 196
                     *** *   **********  *  *******************  *********       

consensus_464#0      CTATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGC 958
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      TCATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAAT 1018
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      TCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAA 1078
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      AAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCA 1138
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      AGTCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTT 1198
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      GTGCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTT 1258
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      ATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTAC 1318
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      GGATAT 1324
consensus_464#1      ------