These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATGGCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGTGCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATTAGTGATGGTCACTACTAGAAAACAAGTTTTTGCAGGCAGCTAGTAAATATTTCGCCGGTAGGCTAAGGCCTGCGAAAGTCGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGCAGACGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG] [+] EMBL AK109240 [TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATGGCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGTGCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATTAGTGATGGTCACTACTAGAAAACAAGTTTTTGCAGGCAGCTAGTAAATATTTCGCCGGTAGGCTAAGGCCTGCGAAAGTCGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGCAGACGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG] consensusID : consensus_4649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 346 fasta sequence [GTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGNGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCANCATGAGCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGCGGCGGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACGACTACAGGGCCCTGCCTCGGAGCGACGCCCCTTCCCCGGATGCATT] [+] EMBL C72467 [GTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGGTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGNGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTCCTCCANCATGAGCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGCGGCGGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACGACTACAGGGCCCTGCCTCGGAGCGACGCCCCTTCCCCGGATGCATT] [+] EMBL C71788 [ TCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGCGTCCCTCGTCGCCATCGCCATCGCCATGGCTCTNATGGTGGTTCAACCTGGCCGGCAGATGACTGCNTTTNCTGCTCGGACGTCGCCGGCGGGGCGGCGGAGGCGTTCTGGCGTGCCGCCATGCCCGGNGCTCCCATGCCGGACGCCATCGTCNAGCTCCTCCACCATNAGCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGNGGCGGCna ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4649#0 TAGCTGCAAAGTCCTCAAGGCGAACGGCCTCCATCTTCTCCTTCCAGCTCCTCCCATGGC 60 consensus_4649#1 ------------------------------------------------------------ consensus_4649#0 GTCCCTCGTCGCCATCGCCATCGCCATGGCTCTCATGGTGCAGAGGATATCCCAGCCATG 120 consensus_4649#1 ------------------------------------------------------------ consensus_4649#0 GCTGAAATTAACTTGACGCATATCATCTCATCATCACTTGCATTTCAACTTCTGGATTGT 180 consensus_4649#1 --------GTCCTCAAGGCGAACGGCCTC--CATCTTCTCC-TTCCAGCTCCTCCCATG- 48 ** * ** * *** **** * * ** ** ** ** ** consensus_4649#0 GCAGACATGTTTAGCTGATGCAGTAAACGTTGCCTGTTTGAATTGGTCCTTGATCAGGTG 240 consensus_4649#1 ----GCGTCCCTCGTCGCCATCGCCATCGCCA-----------TGGCTCTCA---TGGTG 90 * * * * * * * ** *** ** **** consensus_4649#0 GTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGCGGCGGCG 300 consensus_4649#1 GTTCAACCTGGCCGGCAGATGACTGCCTTTGCTGCTCGGACGTCGCCGGCGGNG-CGGCG 149 **************************************************** * ***** consensus_4649#0 GAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTC 360 consensus_4649#1 GAGGCGTTCTGGCGTGCCGCCATGCCCGGCGCTCCCATGCCGGACGCCATCGTCGAGCTC 209 ************************************************************ consensus_4649#0 CTCCACCATGGTGAATCCGTGAACTTAATTGTGTACACTACTTTAAATGATACTAGTATT 420 consensus_4649#1 CTCCANCATGA---------GCACGGCGTTGCTAGCGCCGGCGGCAAGGCCAACGGCGGC 260 ***** **** * ** *** * * ** * * * consensus_4649#0 AGTGATGGTC-ACTACTAGAAAACAAGTTTTTGCA-GGCAGCTAGTAAATATTTCGCCGG 478 consensus_4649#1 GGCGACGGTCCACCGCCGCCGATGAACTTCAACTACGACGACTACAGGGCCCTGCCTCGG 320 * ** **** ** * * ** ** * * * *** * * *** consensus_4649#0 TAGGCTAAGGCCTGCGAAAGT-CGTTGATTTTTGCAGGCGGAGCCTCTATCCGCTTGCGC 537 consensus_4649#1 AGCGACGCCCCTTCCCCGGATGCATT---------------------------------- 346 * * * * * * ** consensus_4649#0 AGACGGCATCCTTGTATCACCCACTTGCAAAAAGTTTTTGGG 579 consensus_4649#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||