These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTATGATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCGATGAGCCCACCACCTAAG] [+] EMBL CA762022 [TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTATGATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCGATGAGCCCACCACCTAAG] consensusID : consensus_4650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACCAAC] [-] EMBL CB096581 [GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACCAAC] consensusID : consensus_4650#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAATATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC] [-] EMBL BE228493 [TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAATATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4650#0 TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTAT 60 consensus_4650#2 --------------------------------TNTCATTATTTCCAATAAAAAAACTNAT 28 consensus_4650#1 -------------------------------GNTCGATTATTTNCAATAAANAAACTTGT 29 ******* ******* ***** * consensus_4650#0 GATACTACAGTTTGCAAA--GCACACCATTAGCT-ATATTTGCCCGGTCCACCGTAGTAT 117 consensus_4650#2 GATANAACAGTTTGCAAA--GCACACCATTAGA--ATATTTGCCCGGTCCACCGTAGTAN 84 consensus_4650#1 GATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGT 89 *** ***** **** * ********** *** ******** ********* consensus_4650#0 ACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGA-TTGTC 176 consensus_4650#2 ACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGA-TTGTG 143 consensus_4650#1 NCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTC 149 ********* ** *************************** ****** ** * **** consensus_4650#0 GGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAAT 236 consensus_4650#2 GTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAAT 203 consensus_4650#1 GGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAAT 209 * ** ********** **** ************************** *********** consensus_4650#0 AGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACT 296 consensus_4650#2 AGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACT 263 consensus_4650#1 AGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACT 269 ************* ** * ******* *********** *** *** ****** ***** consensus_4650#0 ACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGC 356 consensus_4650#2 ACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC------------------- 304 consensus_4650#1 NNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGC 329 **** *********************** ** consensus_4650#0 AAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGT 416 consensus_4650#2 ------------------------------------------------------------ consensus_4650#1 AAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGT 389 consensus_4650#0 ATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAAC 476 consensus_4650#2 ------------------------------------------------------------ consensus_4650#1 ATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAAC 449 consensus_4650#0 ATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACC 536 consensus_4650#2 ------------------------------------------------------------ consensus_4650#1 ATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACC 509 consensus_4650#0 AACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAG 596 consensus_4650#2 ------------------------------------------------------------ consensus_4650#1 AAC--------------------------------------------------------- 512 consensus_4650#0 GCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAA 656 consensus_4650#2 ------------------------------------------------------------ consensus_4650#1 ------------------------------------------------------------ consensus_4650#0 CCCGATGAGCCCACCACCTAAG 678 consensus_4650#2 ---------------------- consensus_4650#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||