These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCAC-GCCTGTCC-CCGATTCCTC-GCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTC-CC-GCCC-GCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGCTATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA] [+] EMBL BI803154 [GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCAC GCCTGTCC CCGATTCCTC GCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTC CC GCCC GCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGCTATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAA ] [+] EMBL BI801930 [ GTGTT CCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACAGCCT TCCGCCGATTCCTCGGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCGCCGGCCCGGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATCACCATGAAGAAATGGCACCTAAAAAAAAAA] consensusID : consensus_4651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF316545 [GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4651#0 GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGC 60 consensus_4651#1 ------------------------------------------------------------ consensus_4651#0 CACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACGCCT 120 consensus_4651#1 ------------------------------------------------------------ consensus_4651#0 GTCCCCGATTCCTCGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCCC 180 consensus_4651#1 ----------------------------------------------------GATGGACT 8 * consensus_4651#0 GCCCGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGC 240 consensus_4651#1 GAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGC 68 * * ** ************************************* **** consensus_4651#0 TATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTAT 300 consensus_4651#1 TATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTAT 128 ******************************* *********** **************** consensus_4651#0 CCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTT 360 consensus_4651#1 ACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTT 188 ********************************************** ***** ****** consensus_4651#0 AATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA----- 415 consensus_4651#1 AATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 248 ********************************* *** * ********** consensus_4651#0 ----------------------------- consensus_4651#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||