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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4651 cluster # 4651       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4651#0 length = 415 sequences # 2  
consensus_4651#1 length = 277 sequences # 1  

consensusID : consensus_4651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence
                              [GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCAC-GCCTGTCC-CCGATTCCTC-GCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTC-CC-GCCC-GCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGCTATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA]

[+] EMBL BI803154             [GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCAC GCCTGTCC CCGATTCCTC GCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTC CC GCCC GCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGCTATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAA     ]
[+] EMBL BI801930             [  GTGTT CCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACAGCCT TCCGCCGATTCCTCGGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCGCCGGCCCGGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATCACCATGAAGAAATGGCACCTAAAAAAAAAA]


>consensus_4651#0 GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGC CACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACGCCT GTCCCCGATTCCTCGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCCC GCCCGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGC TATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTAT CCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTT AATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA



consensusID : consensus_4651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF316545             [GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_4651#1 GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTA TTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTAT AGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGT GCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4651#0      GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGC 60
consensus_4651#1      ------------------------------------------------------------
                                                                                  

consensus_4651#0      CACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACGCCT 120
consensus_4651#1      ------------------------------------------------------------
                                                                                  

consensus_4651#0      GTCCCCGATTCCTCGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCCC 180
consensus_4651#1      ----------------------------------------------------GATGGACT 8
                                                                                * 

consensus_4651#0      GCCCGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGC 240
consensus_4651#1      GAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGC 68
                      *   *        **   ************************************* ****

consensus_4651#0      TATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTAT 300
consensus_4651#1      TATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTAT 128
                      ******************************* *********** ****************

consensus_4651#0      CCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTT 360
consensus_4651#1      ACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTT 188
                       ********************************************** ***** ******

consensus_4651#0      AATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA----- 415
consensus_4651#1      AATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 248
                      ********************************* ***    *   **********     

consensus_4651#0      -----------------------------
consensus_4651#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)