cluster # 4652

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Oryza sativa
cluster # 4652 cluster # 4652 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4652#0 length = 711 sequences # 1

consensus_4652#1 length = 448 sequences # 2

consensusID : consensus_4652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [TTCCATCTAATCGCTTCTCCACCGGAGCTGCTTTAGGGCGACGGCGAGATCGATTCGACGGGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGGCCGCCATGATCGGGGGCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAGACAGCCCCATCGGCGGCGGGCGAGGGCCGCAAGGCGGCGTCCACCTACGCGGCGATCGACGACTGGGTCATCCCGGACCGCGAGGTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGGCCGCCACCCTCGACCTCAAGGAGTCCTTCCAGTTTGCTAAGTCTGCTCAATTGGAGCCTCTCCCCTCTGGTGACCTTGATGTCCCTACAAAGGTGGGTCAGGAGGGTCTTGTTCACTCAGAAACACCTCAGGATCTTGTTCATTCAGAAACACAGGGTCTTGTTGATTTAGGAGCATCCCAGGATCTTGTTCATTCGGAAACATCTCAGGGTCTTGTTCATTCGGAATCATCTCAGGGTCTTATTCATTCAAAAACTTCTGAGCATGAGGATAACCATGAAATTTCACTTGTTTCCTCTGGAGCCCCTGGACGCGTTGTGCAAGCGTTCACAATGCTACAGGATAGCCCTGAAGCACAGGAAGTTGTTGCCTCACTTGCTTCTGATCAGAATGTTTGGAACGCTGTAATGA]

[+] EMBL AK069273             [TTCCATCTAATCGCTTCTCCACCGGAGCTGCTTTAGGGCGACGGCGAGATCGATTCGACGGGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGGCCGCCATGATCGGGGGCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAGACAGCCCCATCGGCGGCGGGCGAGGGCCGCAAGGCGGCGTCCACCTACGCGGCGATCGACGACTGGGTCATCCCGGACCGCGAGGTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGGCCGCCACCCTCGACCTCAAGGAGTCCTTCCAGTTTGCTAAGTCTGCTCAATTGGAGCCTCTCCCCTCTGGTGACCTTGATGTCCCTACAAAGGTGGGTCAGGAGGGTCTTGTTCACTCAGAAACACCTCAGGATCTTGTTCATTCAGAAACACAGGGTCTTGTTGATTTAGGAGCATCCCAGGATCTTGTTCATTCGGAAACATCTCAGGGTCTTGTTCATTCGGAATCATCTCAGGGTCTTATTCATTCAAAAACTTCTGAGCATGAGGATAACCATGAAATTTCACTTGTTTCCTCTGGAGCCCCTGGACGCGTTGTGCAAGCGTTCACAATGCTACAGGATAGCCCTGAAGCACAGGAAGTTGTTGCCTCACTTGCTTCTGATCAGAATGTTTGGAACGCTGTAATGA]




>consensus_4652#0
TTCCATCTAATCGCTTCTCCACCGGAGCTGCTTTAGGGCGACGGCGAGATCGATTCGACG
GGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGGCCGCCATGATCGGGG
GCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAGA
CAGCCCCATCGGCGGCGGGCGAGGGCCGCAAGGCGGCGTCCACCTACGCGGCGATCGACG
ACTGGGTCATCCCGGACCGCGAGGTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGG
CCGCCACCCTCGACCTCAAGGAGTCCTTCCAGTTTGCTAAGTCTGCTCAATTGGAGCCTC
TCCCCTCTGGTGACCTTGATGTCCCTACAAAGGTGGGTCAGGAGGGTCTTGTTCACTCAG
AAACACCTCAGGATCTTGTTCATTCAGAAACACAGGGTCTTGTTGATTTAGGAGCATCCC
AGGATCTTGTTCATTCGGAAACATCTCAGGGTCTTGTTCATTCGGAATCATCTCAGGGTC
TTATTCATTCAAAAACTTCTGAGCATGAGGATAACCATGAAATTTCACTTGTTTCCTCTG
GAGCCCCTGGACGCGTTGTGCAAGCGTTCACAATGCTACAGGATAGCCCTGAAGCACAGG
AAGTTGTTGCCTCACTTGCTTCTGATCAGAATGTTTGGAACGCTGTAATGA

consensusID : consensus_4652#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 448
fasta sequence

                              [CCGGAGCTG-CTTTAGGGCGACGGCGAGATCGATTCGACGGGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGG-CCAGTNGATCGGGGGCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAAACAGCCCCATCGGCGGCGGGCNAGGGCCGCAAG-GGCGTTCCACCTACGCGGCGATCGACGACTGGNTCATCCCGGACCGCAAGTTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGGCCGNCACCCTCGACCTCAAGGAGTNCTTCCAGTTTGCTAAGTCTTCTNAATTGGAGCTCTCCCTCTTGTGACCTTGATGTCCTACAAAGGGTCTTGTTCATTCGGAATCATCTNAGGGTCTTATTCATTCAAAAATTTTNAGCATGAGGATAACCATGAAATTTNATTGTT]

[+] EMBL C71680               [CCGGAGCTG CTTTAGGGCGACGGCGAGATCGATTCGACGGGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGG CCAGTNGATCGGGGGCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAAACAGCCCCATCGGCGGCGGGCNAGGGCCGCAAG GGCGTTCCACCTACGCGGCGATCGACGACTGGNTCATCCCGGACCGCAAGTTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGGCCGNCACCCTCGACCTCAAGGAGTNCTTCCAGTTTGCTAAGTCTTCTNA                                                                                                                          ]
[+] EMBL C72163               [    AGCTGNCTTTAGGGCGACGGCGAGATCGATTCGACGGGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGGCCCANTGAATCGGGGGCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAGACAGCCCCATCGGCGGCGGGCGAGGGCCGCAAGCGGCG TCCACCTACGCGGCGATCGACGACTGGGTCATCCCGGACCGCGAG TGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGGCCGNCACCCTCGACCTCAAGGAGTNCTTCCAGTTTGCTAAGTCTGCTNAATTGGAGCTCTCCCTCTTGTGACCTTGATGTCCTACAAAGGGTCTTGTTCATTCGGAATCATCTNAGGGTCTTATTCATTCAAAAATTTTNAGCATGAGGATAACCATGAAATTTNATTGTT]




>consensus_4652#1
CCGGAGCTGCTTTAGGGCGACGGCGAGATCGATTCGACGGGAAGCCAGCCATGGGAGGGG
GGTCCATCCGCGCGGCGGCGAAGGCCAGTNGATCGGGGGCTACCGCTCCGCCTCGGCCGT
GCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAAACAGCCCCATCGGCGGCGGGCNA
GGGCCGCAAGGGCGTTCCACCTACGCGGCGATCGACGACTGGNTCATCCCGGACCGCAAG
TTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGGCCGNCACCCTCGACCTCAAGGAG
TNCTTCCAGTTTGCTAAGTCTTCTNAATTGGAGCTCTCCCTCTTGTGACCTTGATGTCCT
ACAAAGGGTCTTGTTCATTCGGAATCATCTNAGGGTCTTATTCATTCAAAAATTTTNAGC
ATGAGGATAACCATGAAATTTNATTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4652#0      TTCCATCTAATCGCTTCTCCACCGGAGCTGCTTTAGGGCGACGGCGAGATCGATTCGACG 60
consensus_4652#1      ---------------------CCGGAGCTGCTTTAGGGCGACGGCGAGATCGATTCGACG 39
                                           ***************************************

consensus_4652#0      GGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGGCCGCCATGATCGGGG 120
consensus_4652#1      GGAAGCCAGCCATGGGAGGGGGGTCCATCCGCGCGGCGGCGAAGGCCAGTN-GATCGGGG 98
                      ***********************************************     ********

consensus_4652#0      GCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAGA 180
consensus_4652#1      GCTACCGCTCCGCCTCGGCCGTGCGCCGCGCCGTCCTCCCGGCCTCCCCGGCGCCCCAAA 158
                      ********************************************************** *

consensus_4652#0      CAGCCCCATCGGCGGCGGGCGAGGGCCGCAAGGCGGCGTCCACCTACGCGGCGATCGACG 240
consensus_4652#1      CAGCCCCATCGGCGGCGGGCNAGGGCCGCAAGGGCGT-TCCACCTACGCGGCGATCGACG 217
                      ******************** ************  *  **********************

consensus_4652#0      ACTGGGTCATCCCGGACCGCGAGGTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGG 300
consensus_4652#1      ACTGGNTCATCCCGGACCGCAAGTTGTTCGGCCCCGTGCCCACCCACGAGGAGGCCATGG 277
                      ***** ************** ** ************************************

consensus_4652#0      CCGCCACCCTCGACCTCAAGGAGTCCTTCCAGTTTGCTAAGTCTGCTCAATTGGAGCCTC 360
consensus_4652#1      CCGNCACCCTCGACCTCAAGGAGTNCTTCCAGTTTGCTAAGTCTTCTNAATTGGAGCTCT 337
                      *** ******************** ******************* ** *********   

consensus_4652#0      TCCCCTCTGGTGACCTTGATGTCCCTACAAAGGTGGGTCAGGAGGGTCTTGTTCACTCAG 420
consensus_4652#1      --CCCTCTTGTGACCTTGATGTCC-TACAAAGG------------GTCTTGTTCATTCGG 382
                        ****** *************** ********            ********** ** *

consensus_4652#0      AAACACCTCAGGATCTTGTTCATTCAGAAACACAGGGTCTTGTTGATTTAGGAGCATCCC 480
consensus_4652#1      AATCATCTNAGGGTCTTATTCATTCAAAAA---------TTTTNAGCATGAGGATAACCA 433
                      ** ** ** *** **** ******** ***         ** *     *  *   * ** 

consensus_4652#0      AGGATCTTGTTCATTCGGAAACATCTCAGGGTCTTGTTCATTCGGAATCATCTCAGGGTC 540
consensus_4652#1      TGAAATTTNATTGTT--------------------------------------------- 448
                       * *  **  *  **                                             

consensus_4652#0      TTATTCATTCAAAAACTTCTGAGCATGAGGATAACCATGAAATTTCACTTGTTTCCTCTG 600
consensus_4652#1      ------------------------------------------------------------
                                                                                  

consensus_4652#0      GAGCCCCTGGACGCGTTGTGCAAGCGTTCACAATGCTACAGGATAGCCCTGAAGCACAGG 660
consensus_4652#1      ------------------------------------------------------------
                                                                                  

consensus_4652#0      AAGTTGTTGCCTCACTTGCTTCTGATCAGAATGTTTGGAACGCTGTAATGA 711
consensus_4652#1      ---------------------------------------------------