cluster # 4653

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Oryza sativa
cluster # 4653 cluster # 4653 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4653#0 length = 882 sequences # 2

consensus_4653#1 length = 452 sequences # 1

consensusID : consensus_4653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 882
fasta sequence

                              [CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGATCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGAGTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCTCTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGATCGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCCCGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCTGGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAATCTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCCTGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA]

[+] EMBL AK109324             [CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGATCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGAGTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCTCTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGATCGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCCCGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCTGGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAATCTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCCTGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA]
[+] EMBL OSS13914A            [                      ATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTNATCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGAGTGCTTCAAGCATCTGCNAGGAAGAACCCATTCANATTACGCTGCATTTTTTTTTGNTCTCTNGCCTCCCATCCCCATCTCCGNGTCTCG GACCCCGAGCTCTTCCTCGCCTCGGGGATCGCCGCGCCGCTCTCCGGCGAAG GCGGNTCGAGCCGCCGGCATCCGNCATGGCGGACCCCGTGGAGCTCGGAGCGCCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_4653#0
CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGA
TCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGA
GTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCT
CTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGAT
CGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCC
CGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGA
CGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCA
GGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAA
AAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTT
TGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGT
GGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCA
ATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCT
GGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAAT
CTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCC
TGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA

consensusID : consensus_4653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [TTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGANGNNATGTACAAGAAGCTGGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGATGGCTTCTNNNNNNNNNNCTGNGGNNNNNTNNN]

[+] EMBL CF196616             [TTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGANGNNATGTACAAGAAGCTGGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGATGGCTTCTNNNNNNNNNNCTGNGGNNNNNTNNN]




>consensus_4653#1
TTGAGGGAGCTGATCGACGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTC
GCCGCTCTCGCCGACCAGGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTA
AAAGCCCTGGCCTACAAAAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCAT
TACCTTCGCCTAAGGTTTGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGT
GGAGAGGAAATGAGGGTGGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTT
CATTTTCGCCGTATGCAATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGAN
GNNATGTACAAGAAGCTGGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGAT
GGCTTCTNNNNNNNNNNCTGNGGNNNNNTNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4653#0      CTCTTGAGAAAGAAGAAGATTTATATTCTAGGGAGTAGAATTTGGTCATAGAATTTGTGA 60
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      TCTCAAATAAATATGGAAGCAAGCCTCAAATCTCAGATTATGGTTTATCAGGAAGGAGGA 120
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      GTGCTTCAAGCATCTGCGAGGAAGAACCCATTCAGATTACGCTGCATTTTTTTTTGTTCT 180
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      CTCGCCTCCCATCCCCATCTCCGCGTCTCGCGACCCCGAGCTCTTCCTCGCCTCGCCGAT 240
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      CGCCGCGCCGCTCTCCGGCGAAGCGCGGATCGAGCCGCCGCCATCCGCCATGGCGGACCC 300
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      CGTGGAGCTCGGAGCGCCTCCCTCCCCCGAGCCCCTCTCTCCCTTGAGGGAGCTGATCGA 360
consensus_4653#1      -------------------------------------------TTGAGGGAGCTGATCGA 17
                                                                 *****************

consensus_4653#0      CGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCA 420
consensus_4653#1      CGTCCCCACCGTGGTGTACGTCGCCGACGAGGACCCCAAGTTCGCCGCTCTCGCCGACCA 77
                      ************************************************************

consensus_4653#0      GGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAA 480
consensus_4653#1      GGCGTACGCCGGGTTCCCCTTCCTCTTCGTCACCATGAGCCTAAAAGCCCTGGCCTACAA 137
                      ************************************************************

consensus_4653#0      AAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTT 540
consensus_4653#1      AAGGATGGATCTAAATGAACTCGATGAAGAGCACAGTGCTCATTACCTTCGCCTAAGGTT 197
                      ************************************************************

consensus_4653#0      TGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGT 600
consensus_4653#1      TGAGAACCAACTTCAGGATGCCATGGAAGGTATGGCGGCTGGTGGAGAGGAAATGAGGGT 257
                      ************************************************************

consensus_4653#0      GGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCA 660
consensus_4653#1      GGCGCTGGCCAGGATGGAGACCCTGAAGAAATCGGTGCAGTTTCATTTTCGCCGTATGCA 317
                      ************************************************************

consensus_4653#0      ATACGCAGCGCATGAGTTGCGGAAGGTGGTGCTTAAAGAGGAAGAGATGTACAAGAAGCT 720
consensus_4653#1      ATACGCAGCGCATGAGTTGCGGANNNTGGTGCTTAAAGAGGANGNNATGTACAAGAAGCT 377
                      ***********************   **************** *  **************

consensus_4653#0      GGTTACCCTGACCAACTGAGCCAAGGGAGAATGGCGTAACGATGGCTTCTGTGGTGTAAT 780
consensus_4653#1      GGTNANNNTGACCAACTGAGNCAAGGNNNNNNGGNNNNNNGATGGCTTCTNNNNNNNNNN 437
                      *** *   ************ *****      **      **********          

consensus_4653#0      CTGGGGGTAAATGTCTCTGTGCTCAAGAATTCTCCTCTCATGAGACCTGTTTCCATCTCC 840
consensus_4653#1      CTGNGGNNNNNTNNN--------------------------------------------- 452
                      *** **     *                                                

consensus_4653#0      TGCCACGTAACTACTCCACGTACTAGAACTTGGACTCGAAAA 882
consensus_4653#1      ------------------------------------------