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Oryza sativa
cluster # 4654 cluster # 4654       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4654#0 length = 1920 sequences # 1  
consensus_4654#1 length = 1594 sequences # 1  
consensus_4654#2 length = 436 sequences # 1  

consensusID : consensus_4654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1920
fasta sequence
                              [ACCACATGGCGCTTCCGCTTCGCCTCCTCGGCCGCCTCGCCGGCGGCGGCGGCGGCGGCGGTCGGCGCCTCCCGCGGCCGCTGGCCGTGCTCCACCACCACCACCTCTCCGCCTCGGATCCAAGCCCCACCACCCGCGCGCCGCTGCTCCCGTCACCCCCTCGCTTGCCGCCGCTGCTAGTCCCTTTCGCTGCCGTCCCCGCGCGAAGCTTCTCCTGGTACCCCCGCTCGCCGCCGCCGGCCGGCCCCGCCGCGGCGGAGAAGGCTCCCGAGGAGGACGTGCGCGCCGAGGGGGAAGGCGCGTACCTGCACGACGCGGGTGGTGCTGATTTCGGGGAAGTGGTCGCCACCAGCGCGGCGTCGGCGGATGCAGCCGGAGTAGCCGCCGCAGGAGATGGCGGAAGCGCGTCGGGGTTCGCTGTCAGCTCGCTGATTGACATCCTCGACGGATTTCATAACCTCACCGGGATCCCATGGTGGATAACAATTTCTCTGTCAACTGTGGCCATGAGACTGTTGATACTTCCAGTACTTATAACACAAATTAAGAAGGCTGCTAAAATTGGCAAACTATTACCAGAATGAAGGAGCTTTCGTGACCAGTTCTCTCTCTATCAGAAGAAAAGGCGAGAACTTGGTTGCCCTTCCTTTCTTTGGAACTGGGCCTACTTTTCAATCCAGTTCCCGTGCTTTATACTGTGGATGTCAACAATAAGGACTATGTGTTTGAGCAATCACCCTGGACTAGATAATGTATGTACAAGGGTGGTATTCTGTGGTTTCATAACTTGACCGAGTTTCCACATGGTTCTTCGGGCCTTGTTTTTCCTACCCTAGTTGCAGGTCTCCATTACTTAAATATTCAGATTGCCTTTCATGGAACCCATACCAAGCATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAATCCTGACTATCCCTTTGTTTCTTATTGGGTATGTGATTCCTCAGGGTAGCCTGGTCTACTGGACTACAAATGGTTTAATTACTGTAGCTCAGCAATTGTCCCTCAAAAATGACGCTGTCAAGAAGGTGTTGGGATTGCCTGATACTAGAGCTCACCAGAAGTTTCCTCGTGTGGGTCATAAGATGATGCAGGAACGGCCTCTTGAAGATGCTCACATGCACACTAATTTGACATCAACAAATAATGAAACCGCCAATAACATTATGGAAGGAAAAGTATCTGCGTCCAGTTCACCTGAGGAACTACTTGAACAAGCATTACAACATTTGGAAACTGGAAACCAGGATCAAGCTATTCCACTGATCAGAACAGCAATAGAGAAAGACTCTAGTCTTTATGTAGCACTGATTGGTATGGGACAGACATTGTTCTCAAACAGGTTGTTTCCTGAAGCCACAGTGTGTTTTGAACATGCTATACCAAAGATTGAAGAGCAGGATCCACTTCTTGTGCTTGCATGCTACGGTGCAGGGCTTTCACGTATGCGGCAGGGTGATAGCAAAATGGCGATCGAAAACCTCCAAAGATTAGCAGAGCTCAAGGAACCAGAAAAACCCATTAACAAAAAATGCTATTACCAAGGATTGGTTGCTCTAGGAAGTATACTAATTAATGAGGGACGGAAATCTGAGGCTGTCAAATTCGTGCAACGAGCGGTTGCTTATGATCCAAATTGTGAGATATATCTGAAAGAATGTGATGACACAACAGAAGATAAGCCGAAATCTGCAGAACACTGAATTGCCACAACTGAAGATCAGAGTCAGGCATCATGGATGACGTGTTCCATTCTTCGTTTTTTTTTTTTTTTTACAAACAATACAATTTTGTGCGATTTGTACACATGTAGCATGTTCCATCAAATCTGTAGAATGCACTCACAAGATTTATACCAATATAATGCCGGAACGCA]

[+] EMBL AK105530             [ACCACATGGCGCTTCCGCTTCGCCTCCTCGGCCGCCTCGCCGGCGGCGGCGGCGGCGGCGGTCGGCGCCTCCCGCGGCCGCTGGCCGTGCTCCACCACCACCACCTCTCCGCCTCGGATCCAAGCCCCACCACCCGCGCGCCGCTGCTCCCGTCACCCCCTCGCTTGCCGCCGCTGCTAGTCCCTTTCGCTGCCGTCCCCGCGCGAAGCTTCTCCTGGTACCCCCGCTCGCCGCCGCCGGCCGGCCCCGCCGCGGCGGAGAAGGCTCCCGAGGAGGACGTGCGCGCCGAGGGGGAAGGCGCGTACCTGCACGACGCGGGTGGTGCTGATTTCGGGGAAGTGGTCGCCACCAGCGCGGCGTCGGCGGATGCAGCCGGAGTAGCCGCCGCAGGAGATGGCGGAAGCGCGTCGGGGTTCGCTGTCAGCTCGCTGATTGACATCCTCGACGGATTTCATAACCTCACCGGGATCCCATGGTGGATAACAATTTCTCTGTCAACTGTGGCCATGAGACTGTTGATACTTCCAGTACTTATAACACAAATTAAGAAGGCTGCTAAAATTGGCAAACTATTACCAGAATGAAGGAGCTTTCGTGACCAGTTCTCTCTCTATCAGAAGAAAAGGCGAGAACTTGGTTGCCCTTCCTTTCTTTGGAACTGGGCCTACTTTTCAATCCAGTTCCCGTGCTTTATACTGTGGATGTCAACAATAAGGACTATGTGTTTGAGCAATCACCCTGGACTAGATAATGTATGTACAAGGGTGGTATTCTGTGGTTTCATAACTTGACCGAGTTTCCACATGGTTCTTCGGGCCTTGTTTTTCCTACCCTAGTTGCAGGTCTCCATTACTTAAATATTCAGATTGCCTTTCATGGAACCCATACCAAGCATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAATCCTGACTATCCCTTTGTTTCTTATTGGGTATGTGATTCCTCAGGGTAGCCTGGTCTACTGGACTACAAATGGTTTAATTACTGTAGCTCAGCAATTGTCCCTCAAAAATGACGCTGTCAAGAAGGTGTTGGGATTGCCTGATACTAGAGCTCACCAGAAGTTTCCTCGTGTGGGTCATAAGATGATGCAGGAACGGCCTCTTGAAGATGCTCACATGCACACTAATTTGACATCAACAAATAATGAAACCGCCAATAACATTATGGAAGGAAAAGTATCTGCGTCCAGTTCACCTGAGGAACTACTTGAACAAGCATTACAACATTTGGAAACTGGAAACCAGGATCAAGCTATTCCACTGATCAGAACAGCAATAGAGAAAGACTCTAGTCTTTATGTAGCACTGATTGGTATGGGACAGACATTGTTCTCAAACAGGTTGTTTCCTGAAGCCACAGTGTGTTTTGAACATGCTATACCAAAGATTGAAGAGCAGGATCCACTTCTTGTGCTTGCATGCTACGGTGCAGGGCTTTCACGTATGCGGCAGGGTGATAGCAAAATGGCGATCGAAAACCTCCAAAGATTAGCAGAGCTCAAGGAACCAGAAAAACCCATTAACAAAAAATGCTATTACCAAGGATTGGTTGCTCTAGGAAGTATACTAATTAATGAGGGACGGAAATCTGAGGCTGTCAAATTCGTGCAACGAGCGGTTGCTTATGATCCAAATTGTGAGATATATCTGAAAGAATGTGATGACACAACAGAAGATAAGCCGAAATCTGCAGAACACTGAATTGCCACAACTGAAGATCAGAGTCAGGCATCATGGATGACGTGTTCCATTCTTCGTTTTTTTTTTTTTTTTACAAACAATACAATTTTGTGCGATTTGTACACATGTAGCATGTTCCATCAAATCTGTAGAATGCACTCACAAGATTTATACCAATATAATGCCGGAACGCA]


>consensus_4654#0 ACCACATGGCGCTTCCGCTTCGCCTCCTCGGCCGCCTCGCCGGCGGCGGCGGCGGCGGCG GTCGGCGCCTCCCGCGGCCGCTGGCCGTGCTCCACCACCACCACCTCTCCGCCTCGGATC CAAGCCCCACCACCCGCGCGCCGCTGCTCCCGTCACCCCCTCGCTTGCCGCCGCTGCTAG TCCCTTTCGCTGCCGTCCCCGCGCGAAGCTTCTCCTGGTACCCCCGCTCGCCGCCGCCGG CCGGCCCCGCCGCGGCGGAGAAGGCTCCCGAGGAGGACGTGCGCGCCGAGGGGGAAGGCG CGTACCTGCACGACGCGGGTGGTGCTGATTTCGGGGAAGTGGTCGCCACCAGCGCGGCGT CGGCGGATGCAGCCGGAGTAGCCGCCGCAGGAGATGGCGGAAGCGCGTCGGGGTTCGCTG TCAGCTCGCTGATTGACATCCTCGACGGATTTCATAACCTCACCGGGATCCCATGGTGGA TAACAATTTCTCTGTCAACTGTGGCCATGAGACTGTTGATACTTCCAGTACTTATAACAC AAATTAAGAAGGCTGCTAAAATTGGCAAACTATTACCAGAATGAAGGAGCTTTCGTGACC AGTTCTCTCTCTATCAGAAGAAAAGGCGAGAACTTGGTTGCCCTTCCTTTCTTTGGAACT GGGCCTACTTTTCAATCCAGTTCCCGTGCTTTATACTGTGGATGTCAACAATAAGGACTA TGTGTTTGAGCAATCACCCTGGACTAGATAATGTATGTACAAGGGTGGTATTCTGTGGTT TCATAACTTGACCGAGTTTCCACATGGTTCTTCGGGCCTTGTTTTTCCTACCCTAGTTGC AGGTCTCCATTACTTAAATATTCAGATTGCCTTTCATGGAACCCATACCAAGCATTATCC AGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAATCCTGACTATCCC TTTGTTTCTTATTGGGTATGTGATTCCTCAGGGTAGCCTGGTCTACTGGACTACAAATGG TTTAATTACTGTAGCTCAGCAATTGTCCCTCAAAAATGACGCTGTCAAGAAGGTGTTGGG ATTGCCTGATACTAGAGCTCACCAGAAGTTTCCTCGTGTGGGTCATAAGATGATGCAGGA ACGGCCTCTTGAAGATGCTCACATGCACACTAATTTGACATCAACAAATAATGAAACCGC CAATAACATTATGGAAGGAAAAGTATCTGCGTCCAGTTCACCTGAGGAACTACTTGAACA AGCATTACAACATTTGGAAACTGGAAACCAGGATCAAGCTATTCCACTGATCAGAACAGC AATAGAGAAAGACTCTAGTCTTTATGTAGCACTGATTGGTATGGGACAGACATTGTTCTC AAACAGGTTGTTTCCTGAAGCCACAGTGTGTTTTGAACATGCTATACCAAAGATTGAAGA GCAGGATCCACTTCTTGTGCTTGCATGCTACGGTGCAGGGCTTTCACGTATGCGGCAGGG TGATAGCAAAATGGCGATCGAAAACCTCCAAAGATTAGCAGAGCTCAAGGAACCAGAAAA ACCCATTAACAAAAAATGCTATTACCAAGGATTGGTTGCTCTAGGAAGTATACTAATTAA TGAGGGACGGAAATCTGAGGCTGTCAAATTCGTGCAACGAGCGGTTGCTTATGATCCAAA TTGTGAGATATATCTGAAAGAATGTGATGACACAACAGAAGATAAGCCGAAATCTGCAGA ACACTGAATTGCCACAACTGAAGATCAGAGTCAGGCATCATGGATGACGTGTTCCATTCT TCGTTTTTTTTTTTTTTTTACAAACAATACAATTTTGTGCGATTTGTACACATGTAGCAT GTTCCATCAAATCTGTAGAATGCACTCACAAGATTTATACCAATATAATGCCGGAACGCA



consensusID : consensus_4654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1594
fasta sequence
                              [CCCTCCAATCCACACTGGTGTTCGCTGCCTCCGCGGCCGGTGATAGGACGAGTTCGGCTCCGAACGCCTCAGTGCTGCTCTACTCGCACATGAGGTGTTCGTTCAAATGCTTGCGAGTTGTTCGCCTCTTGTTCTGCTTCTACCTATCACCGGCGAGACGTAGCCGGGACGACGATGCTGGCAGCCGTGGACGCCGTGGCTGACTCTCGCCGGCCGTGAGCCTGTGCAAGCAGCAGGCAGCGGCAACAGGTTCTCGTCGCGAGGCGAGGATGACGTCATCGAGCATGTGGGCCCACCTGTCAGCGGACATGGGACTGCGGCCCCACCTGTCAGCGAAGGGTTGAACTCCCTTCAAATTGCACCCGCCTTGCCGCCGAGAGCGCCGAGCCGTAACCTTGGCCAACGAACTTCTCTCCTCCCTCCGTTCTCCCCTCGCCGGTGAGCCAAGAAACCAAGAACCCACTCGCCGCCTCCGCTGCTCGCCGGACAGAGCGCCAAGAAACCAAGAGCCGCCTCGCCTGACGCCATGGGTGGTCGAAAGAAGCCGGGTTCCAAGAAGATGCCAGCCCCTGCTGTGATGCGCATCCGCTCTCCACCTCCAGACCCGCACAGGAGGGCGCGAGCTGCGCCCCGAAGGTGCATCCCTCCATTGGCTTCGGATTCCGAGTCGTCTGCTTCTTCTCCGACGACTTCTCCAGCCGCCGCCGCGGCTGCTCTGCCTGGCATCGCTCAAGCCCGGCACGAGTTCTTCGCCAAGCACACGGTGTACCACTACGGAGCGCCTCCGACTGCTCAACGAAACGAGCAGCGGGAGAGCGCGGGAGGATGCCAGAGCGTGCGCGGCGGAGTTCGCCGCCAACCAGCTGACGGCCTTGCCGCTGCGGCGGGGCGAGGACATCTCCGCGGCTTCCTCCTCGCGCCGTCAAGAATCGGTGGCGGAGCGCGCGGGGCGGTGGATGCTCCTGGACTCATCGGCGATCGGTTTCTCGACTCCGGCCACGGCAGCTTGGCCGGTACCGGAATGGACGCACCAGCCGGCGGGGAACGCATTGGAGTACGGCCCATGGAATCCTCCGACGATGACAGCACCTTCTGCTCCAGGTGCGCCCGAGCTCAGCGGGGAGCCGCCAGCGCCACCGCCCTCGTCACGACCGCTGTCGCCGCCGCCACCTCCGCCAGGTGTCATTCCACCACCGCCGGGCGTGATCCCGGCGCCGCCACCTGCGTGGTGGACGGAGCACCACCACCACCCGGCGGCGTCTATGCCACCACGAGGACCATAGCCTAGAGGAAGAGGAACCGCAGGAGCAGAACCTCTGACAATCACTTCTTCATTATCTCTTCAGAAGTTTCTGCTGCTTCAGATCGAATGACAGAGAGGGGATGTCTTCTTTTTTTCTTCTTCTCCTTTTTCTTCTTCTTCTTTTGTTAATATGGGCTCAGGGTAGGAAATCGTCAAACCTTCTGTTTCCCGGTTGTTAATTAGCTATTACCCATTATGTTCTGATGAAGTTCACAAACTGCTGTAAGCAACCGTACAATGTGCGCCTGAACAAATTGTGCGTTCCGGCATTATATTGGTATAAATCTTGTG]

[+] EMBL AK073301             [CCCTCCAATCCACACTGGTGTTCGCTGCCTCCGCGGCCGGTGATAGGACGAGTTCGGCTCCGAACGCCTCAGTGCTGCTCTACTCGCACATGAGGTGTTCGTTCAAATGCTTGCGAGTTGTTCGCCTCTTGTTCTGCTTCTACCTATCACCGGCGAGACGTAGCCGGGACGACGATGCTGGCAGCCGTGGACGCCGTGGCTGACTCTCGCCGGCCGTGAGCCTGTGCAAGCAGCAGGCAGCGGCAACAGGTTCTCGTCGCGAGGCGAGGATGACGTCATCGAGCATGTGGGCCCACCTGTCAGCGGACATGGGACTGCGGCCCCACCTGTCAGCGAAGGGTTGAACTCCCTTCAAATTGCACCCGCCTTGCCGCCGAGAGCGCCGAGCCGTAACCTTGGCCAACGAACTTCTCTCCTCCCTCCGTTCTCCCCTCGCCGGTGAGCCAAGAAACCAAGAACCCACTCGCCGCCTCCGCTGCTCGCCGGACAGAGCGCCAAGAAACCAAGAGCCGCCTCGCCTGACGCCATGGGTGGTCGAAAGAAGCCGGGTTCCAAGAAGATGCCAGCCCCTGCTGTGATGCGCATCCGCTCTCCACCTCCAGACCCGCACAGGAGGGCGCGAGCTGCGCCCCGAAGGTGCATCCCTCCATTGGCTTCGGATTCCGAGTCGTCTGCTTCTTCTCCGACGACTTCTCCAGCCGCCGCCGCGGCTGCTCTGCCTGGCATCGCTCAAGCCCGGCACGAGTTCTTCGCCAAGCACACGGTGTACCACTACGGAGCGCCTCCGACTGCTCAACGAAACGAGCAGCGGGAGAGCGCGGGAGGATGCCAGAGCGTGCGCGGCGGAGTTCGCCGCCAACCAGCTGACGGCCTTGCCGCTGCGGCGGGGCGAGGACATCTCCGCGGCTTCCTCCTCGCGCCGTCAAGAATCGGTGGCGGAGCGCGCGGGGCGGTGGATGCTCCTGGACTCATCGGCGATCGGTTTCTCGACTCCGGCCACGGCAGCTTGGCCGGTACCGGAATGGACGCACCAGCCGGCGGGGAACGCATTGGAGTACGGCCCATGGAATCCTCCGACGATGACAGCACCTTCTGCTCCAGGTGCGCCCGAGCTCAGCGGGGAGCCGCCAGCGCCACCGCCCTCGTCACGACCGCTGTCGCCGCCGCCACCTCCGCCAGGTGTCATTCCACCACCGCCGGGCGTGATCCCGGCGCCGCCACCTGCGTGGTGGACGGAGCACCACCACCACCCGGCGGCGTCTATGCCACCACGAGGACCATAGCCTAGAGGAAGAGGAACCGCAGGAGCAGAACCTCTGACAATCACTTCTTCATTATCTCTTCAGAAGTTTCTGCTGCTTCAGATCGAATGACAGAGAGGGGATGTCTTCTTTTTTTCTTCTTCTCCTTTTTCTTCTTCTTCTTTTGTTAATATGGGCTCAGGGTAGGAAATCGTCAAACCTTCTGTTTCCCGGTTGTTAATTAGCTATTACCCATTATGTTCTGATGAAGTTCACAAACTGCTGTAAGCAACCGTACAATGTGCGCCTGAACAAATTGTGCGTTCCGGCATTATATTGGTATAAATCTTGTG]


>consensus_4654#1 CCCTCCAATCCACACTGGTGTTCGCTGCCTCCGCGGCCGGTGATAGGACGAGTTCGGCTC CGAACGCCTCAGTGCTGCTCTACTCGCACATGAGGTGTTCGTTCAAATGCTTGCGAGTTG TTCGCCTCTTGTTCTGCTTCTACCTATCACCGGCGAGACGTAGCCGGGACGACGATGCTG GCAGCCGTGGACGCCGTGGCTGACTCTCGCCGGCCGTGAGCCTGTGCAAGCAGCAGGCAG CGGCAACAGGTTCTCGTCGCGAGGCGAGGATGACGTCATCGAGCATGTGGGCCCACCTGT CAGCGGACATGGGACTGCGGCCCCACCTGTCAGCGAAGGGTTGAACTCCCTTCAAATTGC ACCCGCCTTGCCGCCGAGAGCGCCGAGCCGTAACCTTGGCCAACGAACTTCTCTCCTCCC TCCGTTCTCCCCTCGCCGGTGAGCCAAGAAACCAAGAACCCACTCGCCGCCTCCGCTGCT CGCCGGACAGAGCGCCAAGAAACCAAGAGCCGCCTCGCCTGACGCCATGGGTGGTCGAAA GAAGCCGGGTTCCAAGAAGATGCCAGCCCCTGCTGTGATGCGCATCCGCTCTCCACCTCC AGACCCGCACAGGAGGGCGCGAGCTGCGCCCCGAAGGTGCATCCCTCCATTGGCTTCGGA TTCCGAGTCGTCTGCTTCTTCTCCGACGACTTCTCCAGCCGCCGCCGCGGCTGCTCTGCC TGGCATCGCTCAAGCCCGGCACGAGTTCTTCGCCAAGCACACGGTGTACCACTACGGAGC GCCTCCGACTGCTCAACGAAACGAGCAGCGGGAGAGCGCGGGAGGATGCCAGAGCGTGCG CGGCGGAGTTCGCCGCCAACCAGCTGACGGCCTTGCCGCTGCGGCGGGGCGAGGACATCT CCGCGGCTTCCTCCTCGCGCCGTCAAGAATCGGTGGCGGAGCGCGCGGGGCGGTGGATGC TCCTGGACTCATCGGCGATCGGTTTCTCGACTCCGGCCACGGCAGCTTGGCCGGTACCGG AATGGACGCACCAGCCGGCGGGGAACGCATTGGAGTACGGCCCATGGAATCCTCCGACGA TGACAGCACCTTCTGCTCCAGGTGCGCCCGAGCTCAGCGGGGAGCCGCCAGCGCCACCGC CCTCGTCACGACCGCTGTCGCCGCCGCCACCTCCGCCAGGTGTCATTCCACCACCGCCGG GCGTGATCCCGGCGCCGCCACCTGCGTGGTGGACGGAGCACCACCACCACCCGGCGGCGT CTATGCCACCACGAGGACCATAGCCTAGAGGAAGAGGAACCGCAGGAGCAGAACCTCTGA CAATCACTTCTTCATTATCTCTTCAGAAGTTTCTGCTGCTTCAGATCGAATGACAGAGAG GGGATGTCTTCTTTTTTTCTTCTTCTCCTTTTTCTTCTTCTTCTTTTGTTAATATGGGCT CAGGGTAGGAAATCGTCAAACCTTCTGTTTCCCGGTTGTTAATTAGCTATTACCCATTAT GTTCTGATGAAGTTCACAAACTGCTGTAAGCAACCGTACAATGTGCGCCTGAACAAATTG TGCGTTCCGGCATTATATTGGTATAAATCTTGTG



consensusID : consensus_4654#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence
                              [CTTTCATGGAACCCATACCAAGCATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAATCCTGACTATCCCTTTGTTTCTTATTGGGTATGTGATTCCTCAGGGTAGCCTGGTCTACTGGACTACAAATGGTTTAATTACTGTAGCTCAGGTCAGTACAATATTTTGTTTTTCCTGATGTAAAGAAGGTCACTTGTTACTTGTTAGTCAAAATGTAATATCCAGCATCTGTGTTTCTAGTGGTCCCATGCCAAAATATCTGTACGTATATGATAGTTCTTTTACATATTTTCTAGAGAAGTGTTTAGAATTCAATAGTCTTTATTTATTTAGAATAAAGANGNTNNNTTCAGNCCANGTTTGGCNNNNNTCTCTCTTTGATTCTGCAATTTGCTGNNNNTCTATATGGANNNNTTNG]

[+] EMBL CF196620             [CTTTCATGGAACCCATACCAAGCATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAATCCTGACTATCCCTTTGTTTCTTATTGGGTATGTGATTCCTCAGGGTAGCCTGGTCTACTGGACTACAAATGGTTTAATTACTGTAGCTCAGGTCAGTACAATATTTTGTTTTTCCTGATGTAAAGAAGGTCACTTGTTACTTGTTAGTCAAAATGTAATATCCAGCATCTGTGTTTCTAGTGGTCCCATGCCAAAATATCTGTACGTATATGATAGTTCTTTTACATATTTTCTAGAGAAGTGTTTAGAATTCAATAGTCTTTATTTATTTAGAATAAAGANGNTNNNTTCAGNCCANGTTTGGCNNNNNTCTCTCTTTGATTCTGCAATTTGCTGNNNNTCTATATGGANNNNTTNG]


>consensus_4654#2 CTTTCATGGAACCCATACCAAGCATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTA CAGGGTATACCTTGAAATCCTGACTATCCCTTTGTTTCTTATTGGGTATGTGATTCCTCA GGGTAGCCTGGTCTACTGGACTACAAATGGTTTAATTACTGTAGCTCAGGTCAGTACAAT ATTTTGTTTTTCCTGATGTAAAGAAGGTCACTTGTTACTTGTTAGTCAAAATGTAATATC CAGCATCTGTGTTTCTAGTGGTCCCATGCCAAAATATCTGTACGTATATGATAGTTCTTT TACATATTTTCTAGAGAAGTGTTTAGAATTCAATAGTCTTTATTTATTTAGAATAAAGAN GNTNNNTTCAGNCCANGTTTGGCNNNNNTCTCTCTTTGATTCTGCAATTTGCTGNNNNTC TATATGGANNNNTTNG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4654#0      ACCACATGGCGCTTCCGCTTCGCCTCCTCGGCCGCCTCGCCGGCGGCGGCGGCGGCGGCG 60
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ----------CCCTCCAATCCACACTGGTGTTCGCTGCCTCCGCGGCCGGTGATAGGACG 50
                                                                                  

consensus_4654#0      GTCGGCGCCTCCCGCGGCCGCTGGCCGTGCTCCACCACCACCACCTCTCCGCCTCGGATC 120
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      AGTTCGGCTCCGAACGCCTCAGTGCTGCTCTACTCGCACATGAGGTGTTCGTTCAAATGC 110
                                                                                  

consensus_4654#0      CAAGCCCCACCACCCGCGCGCCGCTGCTCCCGTCACCCCCTCGCTTGCCGCCGCTGCTAG 180
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      TTGCGAGTTGTTCGCCTCTTGTTCTGCTTCTACCTATCACCGGCGAGACGTAGCCGGGAC 170
                                                                                  

consensus_4654#0      TCCCTTTC--GCTGCCGTCCCCGCGCGAAGCTTCTCCTGGTACCCCCGCTCGC-CGCCGC 237
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      GACGATGCTGGCAGCCGTGGACGCCGTGGCTGACTCTCGCCGGCCGTGAGCCTGTGCAAG 230
                                                                                  

consensus_4654#0      CGGCCGGCCCCGCCGCGGCGGAGAAGGCTCCCGAGGAGGACGTGCGCGCCGAGGGGGAAG 297
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      CAGCAGGCAGCGGCAACAGGTTCTCGTCGCGAGGCGAGGATGACGTCATCGAGCATGTGG 290
                                                                                  

consensus_4654#0      GCGCGTACCTGCACGACGCGGGTGGTGCTGATTTCGGGGAAGTGGTCGCCACCAGCGCGG 357
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      GCCCACCTGTCAGCGGACATGGGACTGCGGCCCCACCTGTCAGCGAAGGGTTGAACTCCC 350
                                                                                  

consensus_4654#0      CGTCGGCGGATGCAGCCGGAGTAGCCGCCGCAGGAGATGGCGGAAGCGCGTCGGGGTTCG 417
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      TTCAAATTGCACCCGCCTTGCCGCCGAGAGCGCCGAGCCGTAACCTTGGCCAACGAACTT 410
                                                                                  

consensus_4654#0      CTGTCAGCTCGCTGATTGACATCCTCGACGGATTTCATAACCTCACCGGGATCCCATGGT 477
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      CTCTCCTCCCTCCGTTCTCCCCTCGCCGGTGAGCCAAGAAACCAAGAACCCACTCGCCGC 470
                                                                                  

consensus_4654#0      GGATAACAATTTCTCTGTCAACTGT----GGCCATGAGACTGTTGATACTTCCAGTACTT 533
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      CTCCGCTGCTCGCCGGACAGAGCGCCAAGAAACCAAGAGCCGCCTCGCCTGACGCCATGG 530
                                                                                  

consensus_4654#0      ATAACACAAATTAAGAAGGCTGCTAAAATTGGCAAACTATTACCAGAATGAAGGAGCTTT 593
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      GTGGTCGAAAGAAGCCGGGTTCCAAGAAGATGCCAGCCCCTGCTGTGATGCGCATCCGCT 590
                                                                                  

consensus_4654#0      CGTGACCAGTTCTCTCTCTATCAGAAGAAAAGGCGAGAACTTGGTTGCCCTTCCTTTCTT 653
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      CTCCACCTCCAGACCCGCACAGGAGGGCGCGAGCTGCGCCCCGAAGGTGCATCCCTCCAT 650
                                                                                  

consensus_4654#0      TGGAACTGGGCCT---ACTTTTCAATCCAGTTCCCGTGCTTTATACTGTGGATGTCAACA 710
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      TGGCTTCGGATTCCGAGTCGTCTGCTTCTTCTCCGACGACTTCTCCAGCCGCCGCCGCGG 710
                                                                                  

consensus_4654#0      ATAAGGACTATGTGTTTGAGCAATCACCCTGGACTAGATAATGTATGTACAAGG-GTGGT 769
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      CTGCTCTGCCTGGCATCGCTCAAGCCCGGCACGAGTTCTTCGCCAAGCACACGGTGTACC 770
                                                                                  

consensus_4654#0      ATTCTGTGGTTTCATAACTTGACCGAGTTTCCACATGGTTCTTCGGGCCTTGTTTTTCCT 829
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ACTACGGAGCGCCTCCGACTGCTCAACGAAACGAGCAGCGGGAGAGCGCGGGAGGATGCC 830
                                                                                  

consensus_4654#0      ACCCTAGTTGCAGGTCTCCATTACTTAAATATTCAGATTGCCTT-TCATGGAACCCATAC 888
consensus_4654#2      -----------------------------------------CTT-TCATGGAACCCATAC 18
consensus_4654#1      AGAGCGTGCGCGGCGGAGTTCGCCGCCAACCAGCTGACGGCCTTGCCGCTGCGGCGGGGC 890
                                                               ***  *   *   *    *

consensus_4654#0      CAAG-CATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAA 947
consensus_4654#2      CAAG-CATTATCCAGGTATTTTTGGCGTACTGGCAAAGTACTACAGGGTATACCTTGAAA 77
consensus_4654#1      GAGGACATCTCCGCGGCTTCCTCCTCGCGCCGTCAAGAATCGGTGGCGGAGCGCGCGGGG 950
                       * * ***   *  **  *  *   **  * * ***    *    * * *   *  *   

consensus_4654#0      TCCTGACTATCCCTTTGTTTCTT----ATTGGGTATGTGATTCC--TCAGGGTAGCCTGG 1001
consensus_4654#2      TCCTGACTATCCCTTTGTTTCTT----ATTGGGTATGTGATTCC--TCAGGGTAGCCTGG 131
consensus_4654#1      CGGTGGATGCTCCTGGACTCATCGGCGATCGGTTTCTCGACTCCGGCCACGGCAGCTTGG 1010
                         **  *   ***    *  *     ** ** *    ** ***   ** ** *** ***

consensus_4654#0      TC--TACTGGACTACAAATGGTTTAATTACTGTAG--CTCAG--CAATT--GTCCCTCAA 1053
consensus_4654#2      TC--TACTGGACTACAAATGGTTTAATTACTGTAG--CTCAGGTCAGTACAATATTTTGT 187
consensus_4654#1      CCGGTACCGGA--ATGGACGCACCAGCCGGCGGGGAACGCATTGGAGTACGGCCCATGGA 1068
                       *  *** ***  *   * *    *      *  *  * **    * *        *   

consensus_4654#0      AAATGACGCTGTCAAGAAGGTGTTGGGATTGCCTGATACT--AGAGCTCACCAGAAGTTT 1111
consensus_4654#2      TTTTCCTGATGTAAAGAAGGTCACTTG-TTACTTGTTAGTCAAAATGTAATATCCAGCAT 246
consensus_4654#1      ATCCTCCGACGATGACAGCACCTTCTG-CTCCAGGTGCGCCCGAGCTCAGCGGGGAGCCG 1127
                             *  *   * *         *  * *  *                    **   

consensus_4654#0      CCTCGTGTG-GGTCATAAGATGATGCAGGAACGGCCTCTTGAAGAT-GCTCACATGCACA 1169
consensus_4654#2      CTGTGTTTCTAGTGGTCCCATGCCAAAATATCTGTACGTATATGATAGTTCTTTTACATA 306
consensus_4654#1      CCA-GCGCC--ACCGCCCT-CGTCACGACCGCTGT-CGCCGCCGCCACCTCCGCCAGGTG 1182
                      *   *                *         * *         *     **         

consensus_4654#0      CTAATTTGACA--TCAACAAATAATGAAACCGCCAATAACATTATGGAAGGAAAAGTATC 1227
consensus_4654#2      TTTTCTAGAGA--AGTGTTTAGAATTCAATAGTCTTTA--TTTATTTAGAATAAAGANGN 362
consensus_4654#1      TCATTCCACCACCGCCGGGCGTGATCCCGGCGCCGCCA--CCTGCGTGGTGGACGGAGCA 1240
                                *            **      * *   *    *         *  *    

consensus_4654#0      TGCGTCCAGTTCACCTGAGGAACTACTTGAACAAGCATTACAACATTTGGAAACTGGAAA 1287
consensus_4654#2      TNNNTTCAGNCCANGTTTGGCNNNNNTCTCTCTTTGATTCTGCAATTTG----CTGNNNN 418
consensus_4654#1      CCACCACCACCCGGCGGCGTCTATGCCACCACGAGGACCATAGCCTAGAGGAAGAGGAAC 1300
                            *    *      *            *    *        *         *    

consensus_4654#0      CCAGGATCAAGCTATTCCACTGATCAGAACAGCAATAGAGAAAGACTCTAGTCTTTATGT 1347
consensus_4654#2      TCTATATGGANNNNTTNG------------------------------------------ 436
consensus_4654#1      CGCAGGAGCAGAACCTCTGACAATCACTTCTTCATTATCTCTTCAGAAGTTTCTGCTGCT 1360
                               *     *                                            

consensus_4654#0      AGCACTGATTGGTATGGGACAGACATTGTTCTCAAACAGGTTGTTTCCTGAAGCCACAGT 1407
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      TCAGATCGAATGACAGAGAGGGGATGTCTTCTTTTTTTCTTCTTCTCCTTTTTCTTCTTC 1420
                                                                                  

consensus_4654#0      GTGTTTTGAACATGCTATACCAAAGATTGAAGAGCAGGATCCACTTCTTGTGCTTGCATG 1467
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      TTCTTTTGTTAATATGGGCTCAGGGTAGGAAATCGTCAAACCTTCTGTTTCCCGGTTGTT 1480
                                                                                  

consensus_4654#0      CTACGGTGCAGGGCTTTCACGTATGCGGCAGGGTGATAGCAAAATGGCGATCGAAAACCT 1527
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      AATTAGCTATTACCCATTATGTTCTGATGAAGTTCACAAACTGCTGTAAGCAACCGTACA 1540
                                                                                  

consensus_4654#0      CCAAAGATTAGCAGAGCTCAAGGAACCAGAAAAACCCATTAACAAAAAATGCTATTACCA 1587
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ATGTGCGCCTGAACAAATTGTGCGTTCCGGCATTATATTGGTATAAATCTTGTG------ 1594
                                                                                  

consensus_4654#0      AGGATTGGTTGCTCTAGGAAGTATACTAATTAATGAGGGACGGAAATCTGAGGCTGTCAA 1647
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      ATTCGTGCAACGAGCGGTTGCTTATGATCCAAATTGTGAGATATATCTGAAAGAATGTGA 1707
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      TGACACAACAGAAGATAAGCCGAAATCTGCAGAACACTGAATTGCCACAACTGAAGATCA 1767
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      GAGTCAGGCATCATGGATGACGTGTTCCATTCTTCGTTTTTTTTTTTTTTTTACAAACAA 1827
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      TACAATTTTGTGCGATTTGTACACATGTAGCATGTTCCATCAAATCTGTAGAATGCACTC 1887
consensus_4654#2      ------------------------------------------------------------
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      ACAAGATTTATACCAATATAATGCCGGAACGCA 1920
consensus_4654#2      ---------------------------------
consensus_4654#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)