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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1114 fasta sequence
[CGCAAGCACCTGGCCATGCTGGAGCGCCTCTCCAAGCGCGCTGCCGCCCCCGCCCCGTCCCAGGACTCCCCCGTCGCGGCCTTCCTCTCCCGCTTCGCCGCCGCCAAGCTCGCCGCCGAGTCCGCCCTCTCCGCCTGCCGCTCCTCCCCCGACGACGCGCAGCCCTCGCTCTCCGCCGCCGCCGCGGCCATCGACGACCTCGACCGCCTCGTCGCCGAGGCCTCCCACTCCCTCCCACCCTACGAGCTCCGCTCCGCCCTCGCCGCCGCCTCCGACCTCCGCGCCGCCCACAGGCTCGCCGCCTCCGATCTCCGCCCCAAGAAGTCCTTCTCCTTCAGGAACAAGAGCAAAGCCCCCAAGAACCCACCGCAAGATCCTCCTCCCACCTTGCCGCCGCCTCCAGACCAGCCAAACCCCAGCGTCGAGGCGATCCTGCCAGGACTCGGGTTCCGGGGCCGGAGGGACGCCACATTGGTGAAGGATCTGAGGGTCTCCGACGAGAAGGATGGGGATTTCACCCTCGCTGATCTCGTCTCCTGTCAGGTTTACCTCAAGGGCAAATGCCGGGCGCTGCACGTTCACAAGCTGAAGGATTGCCGCGTGTTCGTGGGCGCCGTGTTCGGCTCGGTGCTCATAGAGGACGTCGAGCGCTGCGCATTCGTGATGGCGGCGCACCAGATCAGGATCCACGAGGCGACAGCGACGGATTTCTACCTGAGGGTGAGGAGCAGGCCGATCATTGAGGATTGCTGCGGCGTGAGGTTCGCGCCGCATGCTCTCAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAATTGGGCGAATGTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTTGGTTCCGGAGGAAGAGCGGTTGCAGACCATTGACATTTCAGATGTTCAGGAACGAGAGTATGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGATTATTGTTCTGGATTGGTTAATTCTTCTTGATGTTTACTTGGATTAAGTTTTGGTTTATTATGAGTTTATAGCTTTCATTGTACCTACATATTGATGCATTAAGGAT]
[+] EMBL AK063478 [CGCAAGCACCTGGCCATGCTGGAGCGCCTCTCCAAGCGCGCTGCCGCCCCCGCCCCGTCCCAGGACTCCCCCGTCGCGGCCTTCCTCTCCCGCTTCGCCGCCGCCAAGCTCGCCGCCGAGTCCGCCCTCTCCGCCTGCCGCTCCTCCCCCGACGACGCGCAGCCCTCGCTCTCCGCCGCCGCCGCGGCCATCGACGACCTCGACCGCCTCGTCGCCGAGGCCTCCCACTCCCTCCCACCCTACGAGCTCCGCTCCGCCCTCGCCGCCGCCTCCGACCTCCGCGCCGCCCACAGGCTCGCCGCCTCCGATCTCCGCCCCAAGAAGTCCTTCTCCTTCAGGAACAAGAGCAAAGCCCCCAAGAACCCACCGCAAGATCCTCCTCCCACCTTGCCGCCGCCTCCAGACCAGCCAAACCCCAGCGTCGAGGCGATCCTGCCAGGACTCGGGTTCCGGGGCCGGAGGGACGCCACATTGGTGAAGGATCTGAGGGTCTCCGACGAGAAGGATGGGGATTTCACCCTCGCTGATCTCGTCTCCTGTCAGGTTTACCTCAAGGGCAAATGCCGGGCGCTGCACGTTCACAAGCTGAAGGATTGCCGCGTGTTCGTGGGCGCCGTGTTCGGCTCGGTGCTCATAGAGGACGTCGAGCGCTGCGCATTCGTGATGGCGGCGCACCAGATCAGGATCCACGAGGCGACAGCGACGGATTTCTACCTGAGGGTGAGGAGCAGGCCGATCATTGAGGATTGCTGCGGCGTGAGGTTCGCGCCGCATGCTCTCAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAATTGGGCGAATGTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTTGGTTCCGGAGGAAGAGCGGTTGCAGACCATTGACATTTCAGATGTTCAGGAACGAGAGTATGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGATTATTGTTCTGGATTGGTTAATTCTTCTTGATGTTTACTTGGATTAAGTTTTGGTTTATTATGAGTTTATAGCTTTCATTGTACCTACATATTGATGCATTAAGGAT]
[+] EMBL OSC200 [CGCAAGCACCTGGCCATGCTGGAGCGCCTCTNCAAGCGCGCTGCCTNCCCCGNCCCGTCCCAGGACTNCCCCGTCGCGGCCTTNCTCTCCCGCTTCGGCGCCGGCAAGCTCGCCGCCGAGTCCGGCCTC ]
consensusID : consensus_4655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[ATTCCGTGATGNCGGCGCACCAGATCAGGATCCACGAGGCGACAGCGACGGATTTCTACCTGAGGNTGAGGAGCCAGNCCGATCATTGAGGATTGCTNCGGCNTGAGGTTCGCGCCGCATGCTCTCAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAATTGGGCGAATGTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTTGGTTCCGGAGGAAGAGCGGTTGCAGACCATTGACATTTCAGATGTTCAGGAACGAGAGTATGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGATTATTGTTCTGGATTGGTTAATTCTTCTTGATGTTTACTTGGNTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU082320 [ATTCCGTGATGNCGGCGCACCAGATCAGGATCCACGAGGCGACAGCGACGGATTTCTACCTGAGGNTGAGGAGCCAGNCCGATCATTGAGGATTGCTNCGGCNTGAGGTTCGCGCCGCATGCTCTCAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAATTGGGCGAATGTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTTGGTTCCGGAGGAAGAGCGGTTGCAGACCATTGACATTTCAGATGTTCAGGAACGAGAGTATGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGATTATTGTTCTGGATTGGTTAATTCTTCTTGATGTTTACTTGGNTTAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4655#0 CGCAAGCACCTGGCCATGCTGGAGCGCCTCTCCAAGCGCGCTGCCGCCCCCGCCCCGTCC 60
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 CAGGACTCCCCCGTCGCGGCCTTCCTCTCCCGCTTCGCCGCCGCCAAGCTCGCCGCCGAG 120
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 TCCGCCCTCTCCGCCTGCCGCTCCTCCCCCGACGACGCGCAGCCCTCGCTCTCCGCCGCC 180
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 GCCGCGGCCATCGACGACCTCGACCGCCTCGTCGCCGAGGCCTCCCACTCCCTCCCACCC 240
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 TACGAGCTCCGCTCCGCCCTCGCCGCCGCCTCCGACCTCCGCGCCGCCCACAGGCTCGCC 300
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 GCCTCCGATCTCCGCCCCAAGAAGTCCTTCTCCTTCAGGAACAAGAGCAAAGCCCCCAAG 360
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 AACCCACCGCAAGATCCTCCTCCCACCTTGCCGCCGCCTCCAGACCAGCCAAACCCCAGC 420
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 GTCGAGGCGATCCTGCCAGGACTCGGGTTCCGGGGCCGGAGGGACGCCACATTGGTGAAG 480
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 GATCTGAGGGTCTCCGACGAGAAGGATGGGGATTTCACCCTCGCTGATCTCGTCTCCTGT 540
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 CAGGTTTACCTCAAGGGCAAATGCCGGGCGCTGCACGTTCACAAGCTGAAGGATTGCCGC 600
consensus_4655#1 ------------------------------------------------------------
consensus_4655#0 GTGTTCGTGGGCGCCGTGTTCGGCTCGGTGCTCATAGAGGACGTCGAGCGCTGCGCATTC 660
consensus_4655#1 -------------------------------------------------------ATTCC 5
* *
consensus_4655#0 GTGATGGCGGCGCACCAGATCAGGATCCACGAGGCGACAGCGACGGATTTCTACCTGAGG 720
consensus_4655#1 GTGATGNCGGCGCACCAGATCAGGATCCACGAGGCGACAGCGACGGATTTCTACCTGAGG 65
****** *****************************************************
consensus_4655#0 GTGAGGAGC-AGGCCGATCATTGAGGATTGCTGCGGCGTGAGGTTCGCGCCGCATGCTCT 779
consensus_4655#1 NTGAGGAGCCAGNCCGATCATTGAGGATTGCTNCGGCNTGAGGTTCGCGCCGCATGCTCT 125
******** ** ******************* **** **********************
consensus_4655#0 CAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAA 839
consensus_4655#1 CAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAA 185
************************************************************
consensus_4655#0 TTGGGCGAATGTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTT 899
consensus_4655#1 TTGGGCGAATGTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTT 245
************************************************************
consensus_4655#0 GGTTCCGGAGGAAGAGCGGTTGCAGACCATTGACATTTCAGATGTTCAGGAACGAGAGTA 959
consensus_4655#1 GGTTCCGGAGGAAGAGCGGTTGCAGACCATTGACATTTCAGATGTTCAGGAACGAGAGTA 305
************************************************************
consensus_4655#0 TGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGATTATTGTTCTGG 1019
consensus_4655#1 TGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGATTATTGTTCTGG 365
************************************************************
consensus_4655#0 ATTGGTTAATTCTTCTTGATGTTTACTTGGATTAAGTTTTGGTTTATTATGAGTTTATAG 1079
consensus_4655#1 ATTGGTTAATTCTTCTTGATGTTTACTTGGNTTAAAAAAAAAAAAAAAAAAAAAAA---- 421
****************************** **** * * *
consensus_4655#0 CTTTCATTGTACCTACATATTGATGCATTAAGGAT 1114
consensus_4655#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||