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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1508 fasta sequence
[TGACTAGTCTTCTTTAGTTTTCCACCGGACAGGAGTAATTGGCAAGAAGAAACAAAAGGGAAAAAAAGTGGCGGAAAATTCATTTTTGGGAGGGGAAATGGCCACCGCAGAGGCGAAGCGCCGGCGCCACCACTCACCGCCGGCCTCCATCGCCGCCGGCGGCGATTCCTCCACCCCTACCTCGGCGGCGCCCGCCGACTCGTCGTCCCCGTCGCTGGATCTCATCCCCGACATAGCCCGCCGCCTGACGTCCCTGGAGGATTTCTTCTCCCTGCGCGCCTCCTGCCGCGCCTACCGCGCGCTCCTCCCGGCGTCGCGCCGCCTCCTCGCCTCGCAGTCCCCGCTCCTCCTCGTCTCCCTCTACCCCTCCTTCGCCGAGGCGCTCTTCCACCCGCGCCTCCGCCGCCTCCACCGCTTCCGCCTCCCATGGGGGCACCACCTGCCCCCCTCGCGCTACACCCTCCTCTACGCCCACGGCTTCCTCGTCACCTCCACCACCGCCGCCAACAACTACCCGCCAAGGCTCCTCCTCCTCCGCCTCTTCACCGGCGAGCAGCTCCGCCTCCCCAGGGTCTTCGCGCCCTTCTCCCGCGTCATCCTCACCGCGGACCTCCTCGTCGTCATCTTCTTGCCCGGCCGGGCCACCGTCCAGCACTGCCGCCCCGGGGACGCGCTCTGGCGCGTTGCCTCCGCCCCTGCACCCCATGTGTTCGACGATTTGATCTCTGTCAATGGCACCCTCTACGCGCTGGTTGGCCTCCGTCTTGCCACGCTCCAGCTGTCGGAGAGTTCGCTGGAGCTGTCATTTCTGGGAGGAGAGCATGATGACGCGAACAGGCCGGAGGGGGATCGGTTCATGCTCGGGGAGTGTGGAGGCGAGGTGTTGCTCATCAGCGTGGAGCATGAGGAGAGGGTTGTGTACCGCGTGTTCCGTTGGGCATCTGAGAAAAGGAAGTGGGAGATGATCACCAACTTGGGCGGGCGGTCGCTGTTTCTTGGCTTGGATGGATTCGCAGCTTGCGTTGATCAAGATCATCCAGGGGTTCGAGGGGATTGCTTATATGCAGCTGGGCGACGCTTGGGTGAGTGGCATGAGTATTCCTTGGCTGATGGAACCTGTGATGTCTGCAATGCTGACTATCCAGGCGCGCCACCCCTGAAC-AACAGTTCACTGATCAGACCATCAGTTTGGATCTTTCCCAGCTTGTGTTGATGCAAGCCTGAGTAGGGTTCATCCTAGATCAATGTTGAAGCCCTATTGCTCAGTTGCTCACATGAG-AGAAAAGAATGGTAATGCTTGATCACTAGCTTGCTTACTAGGTCATTTATGTAAACAATATATTCATACGGCGATCAGTACTTGCATCTTATTCGACCAGTCAATTGTTGTTTTGGTCGATATAGTGAATACTTTTCCTTAGGATTTTGACCACAGGAGCAAAATAATTTTGTTCCCAGCATTGCTTTATGTGCTATGCAACTTGTTGAGATATTATGAAGCTTCTTTT]
[+] EMBL AK069350 [TGACTAGTCTTCTTTAGTTTTCCACCGGACAGGAGTAATTGGCAAGAAGAAACAAAAGGGAAAAAAAGTGGCGGAAAATTCATTTTTGGGAGGGGAAATGGCCACCGCAGAGGCGAAGCGCCGGCGCCACCACTCACCGCCGGCCTCCATCGCCGCCGGCGGCGATTCCTCCACCCCTACCTCGGCGGCGCCCGCCGACTCGTCGTCCCCGTCGCTGGATCTCATCCCCGACATAGCCCGCCGCCTGACGTCCCTGGAGGATTTCTTCTCCCTGCGCGCCTCCTGCCGCGCCTACCGCGCGCTCCTCCCGGCGTCGCGCCGCCTCCTCGCCTCGCAGTCCCCGCTCCTCCTCGTCTCCCTCTACCCCTCCTTCGCCGAGGCGCTCTTCCACCCGCGCCTCCGCCGCCTCCACCGCTTCCGCCTCCCATGGGGGCACCACCTGCCCCCCTCGCGCTACACCCTCCTCTACGCCCACGGCTTCCTCGTCACCTCCACCACCGCCGCCAACAACTACCCGCCAAGGCTCCTCCTCCTCCGCCTCTTCACCGGCGAGCAGCTCCGCCTCCCCAGGGTCTTCGCGCCCTTCTCCCGCGTCATCCTCACCGCGGACCTCCTCGTCGTCATCTTCTTGCCCGGCCGGGCCACCGTCCAGCACTGCCGCCCCGGGGACGCGCTCTGGCGCGTTGCCTCCGCCCCTGCACCCCATGTGTTCGACGATTTGATCTCTGTCAATGGCACCCTCTACGCGCTGGTTGGCCTCCGTCTTGCCACGCTCCAGCTGTCGGAGAGTTCGCTGGAGCTGTCATTTCTGGGAGGAGAGCATGATGACGCGAACAGGCCGGAGGGGGATCGGTTCATGCTCGGGGAGTGTGGAGGCGAGGTGTTGCTCATCAGCGTGGAGCATGAGGAGAGGGTTGTGTACCGCGTGTTCCGTTGGGCATCTGAGAAAAGGAAGTGGGAGATGATCACCAACTTGGGCGGGCGGTCGCTGTTTCTTGGCTTGGATGGATTCGCAGCTTGCGTTGATCAAGATCATCCAGGGGTTCGAGGGGATTGCTTATATGCAGCTGGGCGACGCTTGGGTGAGTGGCATGAGTATTCCTTGGCTGATGGAACCTGTGATGTCTGCAATGCTGACTATCCAGGCGCGCCACCCCTGAAC AACAGTTCACTGATCAGACCATCAGTTTGGATCTTTCCCAGCTTGTGTTGATGCAAGCCTGAGTAGGGTTCATCCTAGATCAATGTTGAAGCCCTATTGCTCAGTTGCTCACATGAG AGAAAAGAATGGTAATGCTTGATCACTAGCTTGCTTACTAGGTCATTTATGTAAACAATATATTCATACGGCGATCAGTACTTGCATCTTATTCGACCAGTCAATTGTT ]
[-] EMBL AU163036 [ CAATGCTGACTATCCAGGCTCACCACCCCTGAACAAACAGTTCACTCATCAGACCATCAGTTTGGATCTTCCCCAGCTTGTGCTGATGCAAGCCTGAGAAGGGTTCATCCTAGATCAATGTTGAAGTCCTATTGCTCAGTTGCTCACAAGAGAAAAAAAGAATGGTAATGCTTGATCATTAGCTTGCTTACTAGGTCATTTATGTAAACAATATATTCATACGGTGATCAGTACTTGCATCTTATTCGACCAGTCAATTGTTGTTTTGGTCGATATAGTGAATACTTTTCCTTAGGATTTTGACCACAGGAGCAAAATAATTTTGTTCCCAGCATTGCTTTATGTGCTATGCAACTTGTTGAGATATTATGAAGCTTCTTTT]
consensusID : consensus_4667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[TCGTTACCGTCGCTAGATCTCATCCCTGACATAGCCCGCCGCTTGACGTCCCTGGAGGATTTCTTCTCCCTGCGCGCCTCCTACCGCGCGCTCCTCCCGGCGTTGCGCCGCCTCCTCGCCTCGCAGTCCCCGCTCCTCCTCGTCTCCCTCTACCCCTCCTTCTCCGAGGCGCTCTTCCACCCGCGCCTCCGCCGCCTCCANCGCTTCCGCCTCCCTCCCATGGGGGCACCANCTGCCCCCCTCACGCTACACCCTCCTCTACGCCCACGGGTTCCTCACCANCGCCGCCAACAACT]
[-] EMBL AU163037 [TCGTTACCGTCGCTAGATCTCATCCCTGACATAGCCCGCCGCTTGACGTCCCTGGAGGATTTCTTCTCCCTGCGCGCCTCCTACCGCGCGCTCCTCCCGGCGTTGCGCCGCCTCCTCGCCTCGCAGTCCCCGCTCCTCCTCGTCTCCCTCTACCCCTCCTTCTCCGAGGCGCTCTTCCACCCGCGCCTCCGCCGCCTCCANCGCTTCCGCCTCCCTCCCATGGGGGCACCANCTGCCCCCCTCACGCTACACCCTCCTCTACGCCCACGGGTTCCTCACCANCGCCGCCAACAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4667#0 TGACTAGTCTTCTTTAGTTTTCCACCGGACAGGAGTAATTGGCAAGAAGAAACAAAAGGG 60
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 AAAAAAAGTGGCGGAAAATTCATTTTTGGGAGGGGAAATGGCCACCGCAGAGGCGAAGCG 120
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 CCGGCGCCACCACTCACCGCCGGCCTCCATCGCCGCCGGCGGCGATTCCTCCACCCCTAC 180
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 CTCGGCGGCGCCCGCCGACTCGTCGTCCCCGTCGCTGGATCTCATCCCCGACATAGCCCG 240
consensus_4667#1 ----------------------TCGTTACCGTCGCTAGATCTCATCCCTGACATAGCCCG 38
**** ******** *********** ***********
consensus_4667#0 CCGCCTGACGTCCCTGGAGGATTTCTTCTCCCTGCGCGCCTCCTGCCGCGCCTACCGCGC 300
consensus_4667#1 CCGCTTGACGTCCCTGGAGGATTTCTTCTCCCTGCGCGCCTCCT---------ACCGCGC 89
**** *************************************** *******
consensus_4667#0 GCTCCTCCCGGCGTCGCGCCGCCTCCTCGCCTCGCAGTCCCCGCTCCTCCTCGTCTCCCT 360
consensus_4667#1 GCTCCTCCCGGCGTTGCGCCGCCTCCTCGCCTCGCAGTCCCCGCTCCTCCTCGTCTCCCT 149
************** *********************************************
consensus_4667#0 CTACCCCTCCTTCGCCGAGGCGCTCTTCCACCCGCGCCTCCGCCGCCTCCACCGCTTCCG 420
consensus_4667#1 CTACCCCTCCTTCTCCGAGGCGCTCTTCCACCCGCGCCTCCGCCGCCTCCANCGCTTCCG 209
************* ************************************* ********
consensus_4667#0 CCTCCC----ATGGGGGCACCACCTGCCCCCCTCGCGCTACACCCTCCTCTACGCCCACG 476
consensus_4667#1 CCTCCCTCCCATGGGGGCACCANCTGCCCCCCTCACGCTACACCCTCCTCTACGCCCACG 269
****** ************ *********** *************************
consensus_4667#0 GCTTCCTCGTCACCTCCACCACCGCCGCCAACAACTACCCGCCAAGGCTCCTCCTCCTCC 536
consensus_4667#1 GGTTCCTC---------ACCANCGCCGCCAACAACT------------------------ 296
* ****** **** **************
consensus_4667#0 GCCTCTTCACCGGCGAGCAGCTCCGCCTCCCCAGGGTCTTCGCGCCCTTCTCCCGCGTCA 596
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 TCCTCACCGCGGACCTCCTCGTCGTCATCTTCTTGCCCGGCCGGGCCACCGTCCAGCACT 656
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 GCCGCCCCGGGGACGCGCTCTGGCGCGTTGCCTCCGCCCCTGCACCCCATGTGTTCGACG 716
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 ATTTGATCTCTGTCAATGGCACCCTCTACGCGCTGGTTGGCCTCCGTCTTGCCACGCTCC 776
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 AGCTGTCGGAGAGTTCGCTGGAGCTGTCATTTCTGGGAGGAGAGCATGATGACGCGAACA 836
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 GGCCGGAGGGGGATCGGTTCATGCTCGGGGAGTGTGGAGGCGAGGTGTTGCTCATCAGCG 896
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 TGGAGCATGAGGAGAGGGTTGTGTACCGCGTGTTCCGTTGGGCATCTGAGAAAAGGAAGT 956
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 GGGAGATGATCACCAACTTGGGCGGGCGGTCGCTGTTTCTTGGCTTGGATGGATTCGCAG 1016
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 CTTGCGTTGATCAAGATCATCCAGGGGTTCGAGGGGATTGCTTATATGCAGCTGGGCGAC 1076
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 GCTTGGGTGAGTGGCATGAGTATTCCTTGGCTGATGGAACCTGTGATGTCTGCAATGCTG 1136
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 ACTATCCAGGCGCGCCACCCCTGAACAACAGTTCACTGATCAGACCATCAGTTTGGATCT 1196
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 TTCCCAGCTTGTGTTGATGCAAGCCTGAGTAGGGTTCATCCTAGATCAATGTTGAAGCCC 1256
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 TATTGCTCAGTTGCTCACATGAGAGAAAAGAATGGTAATGCTTGATCACTAGCTTGCTTA 1316
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 CTAGGTCATTTATGTAAACAATATATTCATACGGCGATCAGTACTTGCATCTTATTCGAC 1376
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 CAGTCAATTGTTGTTTTGGTCGATATAGTGAATACTTTTCCTTAGGATTTTGACCACAGG 1436
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 AGCAAAATAATTTTGTTCCCAGCATTGCTTTATGTGCTATGCAACTTGTTGAGATATTAT 1496
consensus_4667#1 ------------------------------------------------------------
consensus_4667#0 GAAGCTTCTTTT 1508
consensus_4667#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||