These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2059 fasta sequence [CCCGCACCTTCCCTTCCCCTGGCCACACCTGCCGCTCCAGATCTGCGCCTCCGCCTCCCCCACGTCACGACGCCGCCGCCGCCGCCGCCGCACGCGCGGCCGTCGCGTCGCTAGCTAACCTCCCCTTCTAGAGCCTTCTAGACGCTTCTCCCGATGCGGAAGAAGCCGGCGAGGGCAGTGCCGGAGTGGCTCAACAGCCCGCTCTGGTCGGCCCCGCCGCCTTCGTCTTCGTCGCCGTCGCCGCCCGTGCCCCCCGACCCCTACGGCGCCGACCTCTCCCCGCCCCCGCCTCCTCCGCCCAAGCCGCCGCCGACCGTCCCGCCCCCGTCGTACGAGCAGGCGGTGGGGTCGTCGAGGAGGGCGAGGAGCGAGGCGGGGTGGGAGGAGGAGGAGGAGGAGGATGGGGAGGTCGGGGGTGGGGCCGCGCTCCGGGCGCACCTGCTCGCCGACTTCAAGCTCGCGCTGTCGAAGAAGGTGGTGAACATGGGGGAGCTGCGGAGGCTCGCCTGCCTCGGCGTGCCGGACGGCGGCGCCGCCGTCCGCCCGCTCGTCTGGAAGTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTTTTGGCCTCATGAGCTAGAAAAGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCTTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCCTTTGAGCTTTGGTAAATCTAGCTTGTGGAATCAATACTTCCAGGAATCAGAAATTCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAAGAATGACCCTGATACAAGCAATTCAGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTCTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATATGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGCTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTGTGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTTCCGTATGAAAAATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAGTAGGAAAGAGCTATGGTTAGGCCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGCCATTAGTTATAGCTGTCAATGTTTGGATAAAATTCCTACTTCCTCAGTTTTCTTGGCCTCTGTCGCATTTGTAACTGAAATTCGTACTGTAAACATTGAAAAAAAAATCGAGGTAAAATTTGTAGGTTTGGCTCGAGTTTCTTTGAAATTCGTGTTTGTATTAACTCTTTACTTGAAAGGAAATGCTAATATGACTATG] [+] EMBL AK099761 [CCCGCACCTTCCCTTCCCCTGGCCACACCTGCCGCTCCAGATCTGCGCCTCCGCCTCCCCCACGTCACGACGCCGCCGCCGCCGCCGCCGCACGCGCGGCCGTCGCGTCGCTAGCTAACCTCCCCTTCTAGAGCCTTCTAGACGCTTCTCCCGATGCGGAAGAAGCCGGCGAGGGCAGTGCCGGAGTGGCTCAACAGCCCGCTCTGGTCGGCCCCGCCGCCTTCGTCTTCGTCGCCGTCGCCGCCCGTGCCCCCCGACCCCTACGGCGCCGACCTCTCCCCGCCCCCGCCTCCTCCGCCCAAGCCGCCGCCGACCGTCCCGCCCCCGTCGTACGAGCAGGCGGTGGGGTCGTCGAGGAGGGCGAGGAGCGAGGCGGGGTGGGAGGAGGAGGAGGAGGAGGATGGGGAGGTCGGGGGTGGGGCCGCGCTCCGGGCGCACCTGCTCGCCGACTTCAAGCTCGCGCTGTCGAAGAAGGTGGTGAACATGGGGGAGCTGCGGAGGCTCGCCTGCCTCGGCGTGCCGGACGGCGGCGCCGCCGTCCGCCCGCTCGTCTGGAAGTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTTTTGGCCTCATGAGCTAGAAAAGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCTTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCCTTTGAGCTTTGGTAAATCTAGCTTGTGGAATCAATACTTCCAGGAATCAGAAATTCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAAGAATGACCCTGATACAAGCAATTCAGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTCTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATATGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGCTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTGTGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTTCCGTATGAAAAATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAGTAGGAAAGAGCTATGGTTAGGCCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGCCATTAGTTATAGCTGTCAATGTTTGGATAAAATTCCTACTTCCTCAGTTTTCTTGGCCTCTGTCGCATTTGTAACTGAAATTCGTACTGTAAACATTGAAAAAAAAATCGAGGTAAAATTTGTAGGTTTGGCTCGAGTTTCTTTGAAATTCGTGTTTGTATTAACTCTTTACTTGAAAGGAAATGCTAATATGACTATG] [+] EMBL C28883 [ CTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTNAGGGTGTGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTNTNGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTNCCGTATGAAAAATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAGTAGGAAAGAGCTATGGTTAGGNCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGCCATTAGTTATAGCTGTCAn ] consensusID : consensus_4670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [GCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACACCTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTGTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATACGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGGTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTATGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCTTCAGTTTTACAAAAAAAAAAA] [-] EMBL CA762007 [GCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACACCTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTGTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATACGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGGTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTATGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCTTCAGTTTTACAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4670#0 CCCGCACCTTCCCTTCCCCTGGCCACACCTGCCGCTCCAGATCTGCGCCTCCGCCTCCCC 60 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CACGTCACGACGCCGCCGCCGCCGCCGCCGCACGCGCGGCCGTCGCGTCGCTAGCTAACC 120 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TCCCCTTCTAGAGCCTTCTAGACGCTTCTCCCGATGCGGAAGAAGCCGGCGAGGGCAGTG 180 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CCGGAGTGGCTCAACAGCCCGCTCTGGTCGGCCCCGCCGCCTTCGTCTTCGTCGCCGTCG 240 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CCGCCCGTGCCCCCCGACCCCTACGGCGCCGACCTCTCCCCGCCCCCGCCTCCTCCGCCC 300 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 AAGCCGCCGCCGACCGTCCCGCCCCCGTCGTACGAGCAGGCGGTGGGGTCGTCGAGGAGG 360 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 GCGAGGAGCGAGGCGGGGTGGGAGGAGGAGGAGGAGGAGGATGGGGAGGTCGGGGGTGGG 420 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 GCCGCGCTCCGGGCGCACCTGCTCGCCGACTTCAAGCTCGCGCTGTCGAAGAAGGTGGTG 480 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 AACATGGGGGAGCTGCGGAGGCTCGCCTGCCTCGGCGTGCCGGACGGCGGCGCCGCCGTC 540 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CGCCCGCTCGTCTGGAAGTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTT 600 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TTGGCCTCATGAGCTAGAAAAGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCT 660 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CCTAAATCCTTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGA 720 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 ATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCC 780 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TTTGAGCTTTGGTAAATCTAGCTTGTGGAATCAATACTTCCAGGAATCAGAAATTCTGGA 840 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 ACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGC 900 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TAACCAGGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAAG 960 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 ATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAAGAATGACCC 1020 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TGATACAAGCAATTCAGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCT 1080 consensus_4670#1 ----------------------GCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCT 38 ************************************** consensus_4670#0 CAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTC 1140 consensus_4670#1 CAGTGGCTTTAAAGACACCTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTG 98 ***************** ***************************************** consensus_4670#0 TACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATAT 1200 consensus_4670#1 TACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATAC 158 *********************************************************** consensus_4670#0 GGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTT 1260 consensus_4670#1 GGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTT 218 ************************************************************ consensus_4670#0 GACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCC 1320 consensus_4670#1 GACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCC 278 ************************************************************ consensus_4670#0 AGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAG 1380 consensus_4670#1 AGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAG 338 ************************************************************ consensus_4670#0 GCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGCTGCAGCACTATCCACCGAC 1440 consensus_4670#1 GCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGGTGCAGCACTATCCACCGAC 398 **************************************** ******************* consensus_4670#0 TAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCG 1500 consensus_4670#1 TAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCG 458 ************************************************************ consensus_4670#0 ATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCT 1560 consensus_4670#1 ATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCT 518 ************************************************************ consensus_4670#0 GATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTGT 1620 consensus_4670#1 GATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTAT 578 ********************************************************** * consensus_4670#0 GGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTT 1680 consensus_4670#1 GGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTT 638 ************************************************************ consensus_4670#0 TACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTTCCGTATGAAA 1740 consensus_4670#1 TACATTAGAAACATCTCCCCTATGTGGAAAAAGCTTCAGTTTTACAAA------AAAAAA 692 ********************************** *********** * *** consensus_4670#0 AATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAG 1800 consensus_4670#1 AA---------------------------------------------------------- 694 ** consensus_4670#0 TAGGAAAGAGCTATGGTTAGGCCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGC 1860 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CATTAGTTATAGCTGTCAATGTTTGGATAAAATTCCTACTTCCTCAGTTTTCTTGGCCTC 1920 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TGTCGCATTTGTAACTGAAATTCGTACTGTAAACATTGAAAAAAAAATCGAGGTAAAATT 1980 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TGTAGGTTTGGCTCGAGTTTCTTTGAAATTCGTGTTTGTATTAACTCTTTACTTGAAAGG 2040 consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 AAATGCTAATATGACTATG 2059 consensus_4670#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||