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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1642 fasta sequence
[CCCACACCTCCACTCCACTCCACGCCATTTTTTCGCTCGCTCGCTCGCCTCGTGCCCACGTTCGCCGAGGGGAGTAGCGTTAGCGTAGCGTGCTCTTCGGGGGCGGGTTGGTTCGCGATGGGGGCGTCGGGGAAGTGGATCAGGACGCTGGTGGGGCTGAGGCCGGCGGCGGAGAGGGAGAAGGAGAGGGGCGGCGGCGGGGGGAAGGGGAGGAAGTGGAGCAGACTGTGGAGGAGCTCGTCGTCGCAGAGGGGCGGCGGGAACGCGTCGGCGTCGGAGGTGTACTCCGAGACGTCGTCCTCCGCCGACGCGCTCAGCTCCGTCGTCGCGGCCGTCGTCCGCGCGCCGCCCAGGGACTTCCGGCTCATCAGGCAGGAGTGGGCCGCCGTCCGCATCCAGACCGCCTTCCGCGCCTTCCTGGCGAGGCGGGCGCTGAGGGCGCTGCGAGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGCCGCCGCGTGCGCAAGCAGCTGGCCGTCACGCTCAAGTGCATGCAGGCGCTCGTCCGGGTGCAGGCTCGCGCGCGGGATCGGCGAGCCAGGATCTCGGCCGACGGCCTCGACTCTCAGGACATGCTCGACGAGCGCGGCGGACGCGTCGATCATGTCAAGGAAGCCGAGGCAGGATGGTGTGGTAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGGTGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCNCAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK102451 [CCCACACCTCCACTCCACTCCACGCCATTTTTTCGCTCGCTCGCTCGCCTCGTGCCCACGTTCGCCGAGGGGAGTAGCGTTAGCGTAGCGTGCTCTTCGGGGGCGGGTTGGTTCGCGATGGGGGCGTCGGGGAAGTGGATCAGGACGCTGGTGGGGCTGAGGCCGGCGGCGGAGAGGGAGAAGGAGAGGGGCGGCGGCGGGGGGAAGGGGAGGAAGTGGAGCAGACTGTGGAGGAGCTCGTCGTCGCAGAGGGGCGGCGGGAACGCGTCGGCGTCGGAGGTGTACTCCGAGACGTCGTCCTCCGCCGACGCGCTCAGCTCCGTCGTCGCGGCCGTCGTCCGCGCGCCGCCCAGGGACTTCCGGCTCATCAGGCAGGAGTGGGCCGCCGTCCGCATCCAGACCGCCTTCCGCGCCTTCCTGGCGAGGCGGGCGCTGAGGGCGCTGCGAGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGCCGCCGCGTGCGCAAGCAGCTGGCCGTCACGCTCAAGTGCATGCAGGCGCTCGTCCGGGTGCAGGCTCGCGCGCGGGATCGGCGAGCCAGGATCTCGGCCGACGGCCTCGACTCTCAGGACATGCTCGACGAGCGCGGCGGACGCGTCGATCATGTCAAGGAAGCCGAGGCAGGATGGTGTGGTAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGGTGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAAT ]
[+] EMBL AU082380 [ ACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATANATGTTCANAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAANAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCNCAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAANATATTTTAGCGGAGTCTTTANATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCNCAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1045 fasta sequence
[TTTGCATGTTTGGATGGCTATTGTTCTCATTGCAGGCAGGATGGTGTGATAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGATGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCACAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATCTTGGGCTTGCAAACTTCTGAAGCATTATGCATGATGCT]
[+] EMBL AK103875 [TTTGCATGTTTGGATGGCTATTGTTCTCATTGCAGGCAGGATGGTGTGATAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGATGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCACAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATCTTGGGCTTGCAAACTTCTGAAGCATTATGCATGATGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4671#0 CCCACACCTCCACTCCACTCCACGCCATTTTTTCGCTCGCTCGCTCGCCTCGTGCCCACG 60
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 TTCGCCGAGGGGAGTAGCGTTAGCGTAGCGTGCTCTTCGGGGGCGGGTTGGTTCGCGATG 120
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 GGGGCGTCGGGGAAGTGGATCAGGACGCTGGTGGGGCTGAGGCCGGCGGCGGAGAGGGAG 180
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 AAGGAGAGGGGCGGCGGCGGGGGGAAGGGGAGGAAGTGGAGCAGACTGTGGAGGAGCTCG 240
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 TCGTCGCAGAGGGGCGGCGGGAACGCGTCGGCGTCGGAGGTGTACTCCGAGACGTCGTCC 300
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 TCCGCCGACGCGCTCAGCTCCGTCGTCGCGGCCGTCGTCCGCGCGCCGCCCAGGGACTTC 360
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 CGGCTCATCAGGCAGGAGTGGGCCGCCGTCCGCATCCAGACCGCCTTCCGCGCCTTCCTG 420
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 GCGAGGCGGGCGCTGAGGGCGCTGCGAGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGC 480
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 CGCCGCGTGCGCAAGCAGCTGGCCGTCACGCTCAAGTGCATGCAGGCGCTCGTCCGGGTG 540
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 CAGGCTCGCGCGCGGGATCGGCGAGCCAGGATCTCGGCCGACGGCCTCGACTCTCAGGAC 600
consensus_4671#1 ------------------------------------------------------------
consensus_4671#0 ATGCTCGACGAGCGCGGCGGACGCGTCGATCATGTCAAGGAAGCCGAGGCAGGATGGTGT 660
consensus_4671#1 ----TTTGCATGTTTGGATGGC-TATTGTTCTCATTGC--------AGGCAGGATGGTGT 47
* * * ** * * * * ** * **************
consensus_4671#0 GGTAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCA 720
consensus_4671#1 GATAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCA 107
* **********************************************************
consensus_4671#0 ATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGT 780
consensus_4671#1 ATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGT 167
************************************************************
consensus_4671#0 GGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGC 840
consensus_4671#1 GGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGC 227
************************************************************
consensus_4671#0 AACCATAGTTGGAGCTATCTGGAAGGGTGGGTGGCCACAAAACCTTGGGAGAGCCGACTG 900
consensus_4671#1 AACCATAGTTGGAGCTATCTGGAAGGGTGGATGGCCACAAAACCTTGGGAGAGCCGACTG 287
****************************** *****************************
consensus_4671#0 ATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAA 960
consensus_4671#1 ATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAA 347
************************************************************
consensus_4671#0 GTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAAT 1020
consensus_4671#1 GTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAAT 407
************************************************************
consensus_4671#0 GTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTC 1080
consensus_4671#1 GTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTC 467
************************************************************
consensus_4671#0 GTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCC 1140
consensus_4671#1 GTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCC 527
************************************************************
consensus_4671#0 CTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTG 1200
consensus_4671#1 CTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTG 587
************************************************************
consensus_4671#0 ACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGG 1260
consensus_4671#1 ACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGG 647
************************************************************
consensus_4671#0 CAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTT 1320
consensus_4671#1 CAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTT 707
************************************************************
consensus_4671#0 CAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTT 1380
consensus_4671#1 CAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTT 767
************************************************************
consensus_4671#0 AAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTT 1440
consensus_4671#1 AAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTT 827
************************************************************
consensus_4671#0 TAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTAC 1500
consensus_4671#1 TAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTAC 887
************************************************************
consensus_4671#0 CTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTG 1560
consensus_4671#1 CTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTG 947
************************************************************
consensus_4671#0 TACAAATGTGAAACTCCNCAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAAAA 1620
consensus_4671#1 TACAAATGTGAAACTCCACAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATC 1007
***************** ****************************************
consensus_4671#0 AAAAAAAAAAAAAAAAAAAAAA---------------- 1642
consensus_4671#1 TTGGGCTTGCAAACTTCTGAAGCATTATGCATGATGCT 1045
*** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||