cluster # 4679

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Oryza sativa
cluster # 4679 cluster # 4679 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4679#0 length = 1282 sequences # 1

consensus_4679#1 length = 735 sequences # 1
consensus_4679#2 length = 218 sequences # 1

consensusID : consensus_4679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1282
fasta sequence

                              [GACGACCAGATCGACCAAACCATCGGCGCTCGCCTCTTGCGACTGAGAGCCTGAGCGAGACACAGAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACCTCACCGACGCCGCGCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAGCCATGGCGAGGACGGACTCCCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGGAGCTCCGCTACACCGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCGTCCTCCTCGCCGCGCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGCCACCACCTCTGCCGCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAGCTCCGCGTGGGTCCTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGACGACGCCTTCACCGTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGCTGCGGCGGCGCCGGCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTCCTTGAGCCATCACCTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGTGGTGTCCGGCAAGTGCTTCCCGGCGCACAGGGCAATACTCGCGTCGAGGTCGCCGGTGTTCATGGCCTCCTTGTTCGGCGACATGAAGGAGAAGAGCTCCCGGAGCGTCGAGATCAGGGACATCGAGCCACAGGTGTTCGGAGCAATGCTCGGCTTCATCTACACCGACTCGGTGCCGGAGCTCGATCAACAAGACGGCGTCGTCGTCGCGCAGCACCTGCTGGCGGCGGCGGACATGTGCGGGCTCGACGGGCTGAAGATCATGTGCGAGGAGAAGCTCATCGCTGGCGCCACCGTGGAGACGGCGGCGACGACGCTGGCGCTGGCGGAGCAGCATGGGTGCCCGCGGCTCAAGGCGAGGTGCGTCGAGGTCGTCGCCGCGAACCTCGACGCCGTCATGGCGACCGAGGGTTACAAGCATCTCATGGCGAGCTCGCCGCTGGTGATGAATGATCTCCTCAGGGCTGTGCGTGGAAGGAAGAGCTGAATTAATCACCGAGGTGATTAGTCCCAATCTCAAACATTTGGTATTACTAATAGCAATGCTATGTATAGGTAGGAGTATTTGCTTGCATCTGATGTTGCGTTATCTCGTATGTAATGAACAGCTAAGCTCATAAACAGTTTCAGCCCACTAT]

[+] EMBL AK105288             [GACGACCAGATCGACCAAACCATCGGCGCTCGCCTCTTGCGACTGAGAGCCTGAGCGAGACACAGAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACCTCACCGACGCCGCGCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAGCCATGGCGAGGACGGACTCCCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGGAGCTCCGCTACACCGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCGTCCTCCTCGCCGCGCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGCCACCACCTCTGCCGCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAGCTCCGCGTGGGTCCTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGACGACGCCTTCACCGTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGCTGCGGCGGCGCCGGCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTCCTTGAGCCATCACCTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGTGGTGTCCGGCAAGTGCTTCCCGGCGCACAGGGCAATACTCGCGTCGAGGTCGCCGGTGTTCATGGCCTCCTTGTTCGGCGACATGAAGGAGAAGAGCTCCCGGAGCGTCGAGATCAGGGACATCGAGCCACAGGTGTTCGGAGCAATGCTCGGCTTCATCTACACCGACTCGGTGCCGGAGCTCGATCAACAAGACGGCGTCGTCGTCGCGCAGCACCTGCTGGCGGCGGCGGACATGTGCGGGCTCGACGGGCTGAAGATCATGTGCGAGGAGAAGCTCATCGCTGGCGCCACCGTGGAGACGGCGGCGACGACGCTGGCGCTGGCGGAGCAGCATGGGTGCCCGCGGCTCAAGGCGAGGTGCGTCGAGGTCGTCGCCGCGAACCTCGACGCCGTCATGGCGACCGAGGGTTACAAGCATCTCATGGCGAGCTCGCCGCTGGTGATGAATGATCTCCTCAGGGCTGTGCGTGGAAGGAAGAGCTGAATTAATCACCGAGGTGATTAGTCCCAATCTCAAACATTTGGTATTACTAATAGCAATGCTATGTATAGGTAGGAGTATTTGCTTGCATCTGATGTTGCGTTATCTCGTATGTAATGAACAGCTAAGCTCATAAACAGTTTCAGCCCACTAT]




>consensus_4679#0
GACGACCAGATCGACCAAACCATCGGCGCTCGCCTCTTGCGACTGAGAGCCTGAGCGAGA
CACAGAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACCTCACCGACGCCGCGCG
CGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAGCCATGGCGAGGACGGA
CTCCCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGGAGCTCCGCTACACCGC
CAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCGTCCTCCTCGCCGCGCC
GACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGCCACCACCTCTGCCGCC
GTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAGCTCCGCGTGGGTCCTG
ATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGACGACGCCTTCACCGTC
GAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGCTGCGGCGGCGCCGGCA
GCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTCCTTGAGCCATCACCTC
GGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGTGGTGTCCGGCAAGTGC
TTCCCGGCGCACAGGGCAATACTCGCGTCGAGGTCGCCGGTGTTCATGGCCTCCTTGTTC
GGCGACATGAAGGAGAAGAGCTCCCGGAGCGTCGAGATCAGGGACATCGAGCCACAGGTG
TTCGGAGCAATGCTCGGCTTCATCTACACCGACTCGGTGCCGGAGCTCGATCAACAAGAC
GGCGTCGTCGTCGCGCAGCACCTGCTGGCGGCGGCGGACATGTGCGGGCTCGACGGGCTG
AAGATCATGTGCGAGGAGAAGCTCATCGCTGGCGCCACCGTGGAGACGGCGGCGACGACG
CTGGCGCTGGCGGAGCAGCATGGGTGCCCGCGGCTCAAGGCGAGGTGCGTCGAGGTCGTC
GCCGCGAACCTCGACGCCGTCATGGCGACCGAGGGTTACAAGCATCTCATGGCGAGCTCG
CCGCTGGTGATGAATGATCTCCTCAGGGCTGTGCGTGGAAGGAAGAGCTGAATTAATCAC
CGAGGTGATTAGTCCCAATCTCAAACATTTGGTATTACTAATAGCAATGCTATGTATAGG
TAGGAGTATTTGCTTGCATCTGATGTTGCGTTATCTCGTATGTAATGAACAGCTAAGCTC
ATAAACAGTTTCAGCCCACTAT

consensusID : consensus_4679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence

                              [AATTTGTAATAGCGATTGCACATTCATTCATTAGGTAGCTCCTGAGACTGTTTATCTACTACAGTAACTTAACTTTGATGTAATCTTGCTATTAATTTATCCCCAATTCCTCGATCTTCCTATACTTAAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACCTCACCGACGCCGCGCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAGCCATGGCGAGGACGGACTCTCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGGAGCTCCGCTACACCGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCGTCCTCCTCGCCGCGCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGCCACCACCTCTGCCGCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAGCTCCGCGTGGGTCCTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGACGACGCCTTCACCGTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGCTGCGGCGGCGCCGGCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTCCTTGAGCCATCACCTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGTGGTGTCCGGCAAGTGCTTCCCGGCGCAC]

[+] EMBL CB627875             [AATTTGTAATAGCGATTGCACATTCATTCATTAGGTAGCTCCTGAGACTGTTTATCTACTACAGTAACTTAACTTTGATGTAATCTTGCTATTAATTTATCCCCAATTCCTCGATCTTCCTATACTTAAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACCTCACCGACGCCGCGCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAGCCATGGCGAGGACGGACTCTCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGGAGCTCCGCTACACCGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCGTCCTCCTCGCCGCGCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGCCACCACCTCTGCCGCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAGCTCCGCGTGGGTCCTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGACGACGCCTTCACCGTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGCTGCGGCGGCGCCGGCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTCCTTGAGCCATCACCTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGTGGTGTCCGGCAAGTGCTTCCCGGCGCAC]




>consensus_4679#1
AATTTGTAATAGCGATTGCACATTCATTCATTAGGTAGCTCCTGAGACTGTTTATCTACT
ACAGTAACTTAACTTTGATGTAATCTTGCTATTAATTTATCCCCAATTCCTCGATCTTCC
TATACTTAAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACCTCACCGACGCCGC
GCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAGCCATGGCGAGGAC
GGACTCTCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGGAGCTCCGCTACAC
CGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCGTCCTCCTCGCCGC
GCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGCCACCACCTCTGCC
GCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAGCTCCGCGTGGGTC
CTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGACGACGCCTTCACC
GTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGCTGCGGCGGCGCCG
GCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTCCTTGAGCCATCAC
CTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGTGGTGTCCGGCAAG
TGCTTCCCGGCGCAC

consensusID : consensus_4679#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence

                              [CCTCTTNCGACTNANAGCCTGAGCGANACACAGAGTTCTAAGATCNACATGGGATGGAGAGGATTCATTTTTNACATCCATCTAATCGCCTCGACATTACAATTTGTAATAGCGATTGCACATTCATTCATTAGATCCGTACATCCATGGGGGCGTCATTCTNGTCGANCCTCACCGNCGCCGCGCGCGNCGTGCACATGTTCAAGATCAATGGCTAC]

[+] EMBL C28446               [CCTCTTNCGACTNANAGCCTGAGCGANACACAGAGTTCTAAGATCNACATGGGATGGAGAGGATTCATTTTTNACATCCATCTAATCGCCTCGACATTACAATTTGTAATAGCGATTGCACATTCATTCATTAGATCCGTACATCCATGGGGGCGTCATTCTNGTCGANCCTCACCGNCGCCGCGCGCGNCGTGCACATGTTCAAGATCAATGGCTAC]




>consensus_4679#2
CCTCTTNCGACTNANAGCCTGAGCGANACACAGAGTTCTAAGATCNACATGGGATGGAGA
GGATTCATTTTTNACATCCATCTAATCGCCTCGACATTACAATTTGTAATAGCGATTGCA
CATTCATTCATTAGATCCGTACATCCATGGGGGCGTCATTCTNGTCGANCCTCACCGNCG
CCGCGCGCGNCGTGCACATGTTCAAGATCAATGGCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4679#0      ------------------------------------------------------------
consensus_4679#1      -------------AATTTGTAATAGCGATTGCACATTCATTCATTAGGTAGCTCCTGAGA 47
consensus_4679#2      CCTCTTNCGACTNANAGCCTGAGCGANACACAGAGTTCTAAGATCNACATGGGATGGAGA 60
                                                                                  

consensus_4679#0      ------GACGACCAGATCGACCAAACC---ATCGGCGCTCGCCTCT----TGCGACTGAG 47
consensus_4679#1      CTGTTTATCTACTACAGTAACTTAACTTTGATGTAATCTTGCTATTAATTTATCCCCAAT 107
consensus_4679#2      GGATTCATTTTTNACATCCATCTAATC--GCCTCGACATTACAATT--TGTAATAGCGAT 116
                                   * *   *   **             *  *   *    *       * 

consensus_4679#0      AGCCTGAGCGAGACACA---GAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACC 104
consensus_4679#1      TCCTCGATCTTCCTATACTTAAGATCCGTACATCCATGGGGGCGTCATTCTCGTCGAACC 167
consensus_4679#2      TGCACATTCATTCATTA-----GATCCGTACATCCATGGGGGCGTCATTCTNGTCGANCC 171
                        *     *       *     ***************************** ***** **

consensus_4679#0      TCACCGACGCCGCGCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAG 164
consensus_4679#1      TCACCGACGCCGCGCGCGCCGTGCACATGTTCAAGATCAATGGCTACTCCGCCACCAGAG 227
consensus_4679#2      TCACCGNCGCCGCGCGCGNCGTGCACATGTTCAAGATCAATGGCTAC------------- 218
                      ****** *********** ****************************             

consensus_4679#0      CCATGGCGAGGACGGACTCCCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGG 224
consensus_4679#1      CCATGGCGAGGACGGACTCTCTCCCGTCCAGGCGCCTCCCCGTCGGCGGCTACCACTGGG 287
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      AGCTCCGCTACACCGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCG 284
consensus_4679#1      AGCTCCGCTACACCGCCAGCCTCATCGCCGACTCCAACCACTGGGTCGCCCTCAAGCTCG 347
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      TCCTCCTCGCCGCGCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGC 344
consensus_4679#1      TCCTCCTCGCCGCGCCGACGTCAAGGCCGCGCTCCGATGCCGCCTCATCAGCAATAGTGC 407
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CACCACCTCTGCCGCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAG 404
consensus_4679#1      CACCACCTCTGCCGCCGTCGACGGCCACGTGTCGCACGCGTTCAAGCGCGCCGGCGAGAG 467
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CTCCGCGTGGGTCCTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGA 464
consensus_4679#1      CTCCGCGTGGGTCCTGATCCTTCGCCGGAGCGCCCTGGAGGCGTCGGGGGCCATCGTCGA 527
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CGACGCCTTCACCGTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGC 524
consensus_4679#1      CGACGCCTTCACCGTCGAGTGCACCATCACGGTGATCACGGAGATACCTGACAATGTCGC 587
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      TGCGGCGGCGCCGGCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTC 584
consensus_4679#1      TGCGGCGGCGCCGGCAGCGCCGGCGAATGTTCTGCCCCCGTTCTCCGGCCGTGGTCTGTC 647
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CTTGAGCCATCACCTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGT 644
consensus_4679#1      CTTGAGCCATCACCTCGGCGAGCTCCTGCGCCGCGGGACGGGGGCGGACGTCACGCTGGT 707
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      GGTGTCCGGCAAGTGCTTCCCGGCGCACAGGGCAATACTCGCGTCGAGGTCGCCGGTGTT 704
consensus_4679#1      GGTGTCCGGCAAGTGCTTCCCGGCGCAC-------------------------------- 735
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CATGGCCTCCTTGTTCGGCGACATGAAGGAGAAGAGCTCCCGGAGCGTCGAGATCAGGGA 764
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CATCGAGCCACAGGTGTTCGGAGCAATGCTCGGCTTCATCTACACCGACTCGGTGCCGGA 824
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      GCTCGATCAACAAGACGGCGTCGTCGTCGCGCAGCACCTGCTGGCGGCGGCGGACATGTG 884
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CGGGCTCGACGGGCTGAAGATCATGTGCGAGGAGAAGCTCATCGCTGGCGCCACCGTGGA 944
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      GACGGCGGCGACGACGCTGGCGCTGGCGGAGCAGCATGGGTGCCCGCGGCTCAAGGCGAG 1004
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      GTGCGTCGAGGTCGTCGCCGCGAACCTCGACGCCGTCATGGCGACCGAGGGTTACAAGCA 1064
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      TCTCATGGCGAGCTCGCCGCTGGTGATGAATGATCTCCTCAGGGCTGTGCGTGGAAGGAA 1124
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      GAGCTGAATTAATCACCGAGGTGATTAGTCCCAATCTCAAACATTTGGTATTACTAATAG 1184
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      CAATGCTATGTATAGGTAGGAGTATTTGCTTGCATCTGATGTTGCGTTATCTCGTATGTA 1244
consensus_4679#1      ------------------------------------------------------------
consensus_4679#2      ------------------------------------------------------------
                                                                                  

consensus_4679#0      ATGAACAGCTAAGCTCATAAACAGTTTCAGCCCACTAT 1282
consensus_4679#1      --------------------------------------
consensus_4679#2      --------------------------------------