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Oryza sativa
cluster # 4682 cluster # 4682       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4682#0 length = 1578 sequences # 3  

consensusID : consensus_4682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1578
fasta sequence
                              [GCAAACTGGGGAAGAATATGAGCTTCATACCATCTATGGTGAAACCTTCCTCAAGGATCGCAACGAGCGTGCTGAGTATATCCACATCAATTTCATGGCTTCTCCCTCCAGCTGCCAGTGCCTGCAAGCTTCTCCAGTCTGCTTCTTTGCTGAAGTTCTTCGTCCACCACGCTTTAAGTATCATGAAGCCGACATCACTTTGTGCTGCATAGTGCGACCGTCGCCAAATGATGCCGATAGTTGCCATGGTTGTCTTATCGAGAACCACAGAATTGATCACCCGGAAGCTGGCATGCGTTTTTGTGGGAAGAAGCATAGCAAGATGGATCCAAATGGCTATGGCCATGGCTGGGATTGGCCAAGCATAGCTGACGTCGAATACAGGTTTTTTGATCCTGACAAGGACGTCGGACTTGTTGAGTACTTGGATGGAGTTATAACCGATATCAAAGCACGTATCAGAGACCTATCTATCAGGGATGAAGACGACAGTGACGAGGACAGTAGCGATGATGATATCTCCGGCTATTCCATGAGATTTGTCTGATGTTGTGATGCTCTAACTTGCAGTACTATTCTTCACCTACAACTTTCTCGAACAGTTATTTACTTACGTATAAATGTTTGAAACTACAGAGCTAGCTTAACGTTGGTGTTATTATTCTGAAATATTCTGTGGCAAGTATGACATAATGCACGATTGGTAGTTTTGGTTGTTTAGTGTAACTTTTGCAAATCGTATGTTGGCAAACGAGACCCAAGATTCGGAGGCTGAAGCCCCGCGTTTCGGGCGGCTGCCGAGGCGGCTCAACACCCAAAACCTGCTGCCATGGCGCACTTCTTGGCCACCGTGGAGCGCGACGCGGTGTCGGTGGTCGCCGGCAACAGCGTGCTCTCCTCGGCCAACATTGCGCGCCTCTCCGCCATGCTGGCACCTTCGCCGCTACCGGATGATCCGCCGCAGCCTCCTCTCCGGGAGCGGAGACCAAAGATCATCAGAATCATCAATGACAGGAGGAACAACATCAGGAGATGCTACAAGGGCTTGCTTGAGATGGCAGATGCCGCGCTGCGCAAGTATGCACACCAAACCGGGGAACAATATGAACTTCACACCATCTATGGCGAGACCTTCCGTAAGGATTATGAGGAGTTCCATGTGTATGTCCATATGAACTTCATGGCTTCTTCGTCTAGCTACAAGGCCCTGCAGGCTCCTCAACCTGTCTGCTTCTTTGCTGAAGCGCTTCGCCCGCCTCGCCCTGGCTATCATGAAGACGACATCACCTTGTGTTCCATTGTGCAACCATCACCAACTGACATCGATAGTTGCCATGGTTCTCTTGCAAATAACCACAGAATTGATCATCCGGAGGCTGGCATGCACTTCGTTGGGAAGCACAACAAGATGGATGGAAGTGACTATGACTGGGATTGGCCACACACAGCTGATGTCTATTACAGGTTTTTTGATCCTGACAGGGATGTTGGCCTTGTGGAGCACTTGTATAAAGTTATAACCCGTTTTAGTGCCCTGTATGGCGGATCCACGGATGAAGATGACAATGAAGATATCAC]

[+] EMBL AK106622             [GCAAACTGGGGAAGAATATGAGCTTCATACCATCTATGGTGAAACCTTCCTCAAGGATCGCAACGAGCGTGCTGAGTATATCCACATCAATTTCATGGCTTCTCCCTCCAGCTGCCAGTGCCTGCAAGCTTCTCCAGTCTGCTTCTTTGCTGAAGTTCTTCGTCCACCACGCTTTAAGTATCATGAAGCCGACATCACTTTGTGCTGCATAGTGCGACCGTCGCCAAATGATGCCGATAGTTGCCATGGTTGTCTTATCGAGAACCACAGAATTGATCACCCGGAAGCTGGCATGCGTTTTTGTGGGAAGAAGCATAGCAAGATGGATCCAAATGGCTATGGCCATGGCTGGGATTGGCCAAGCATAGCTGACGTCGAATACAGGTTTTTTGATCCTGACAAGGACGTCGGACTTGTTGAGTACTTGGATGGAGTTATAACCGATATCAAAGCACGTATCAGAGACCTATCTATCAGGGATGAAGACGACAGTGACGAGGACAGTAGCGATGATGATATCTCCGGCTATTCCATGAGATTTGTCTGATGTTGTGATGCTCTAACTTGCAGTACTATTCTTCACCTACAACTTTCTCGAACAGTTATTTACTTACGTATAAATGTTTGAAACTACAGAGCTAGCTTAACGTTGGTGTTATTATTCTGAAATATTCTGTGGCAAGTATGACATAATGCACGATTGGTAGTTTTGGTTGTTTAGTGTAACTTTTGCAAATCGTATGTTGGCAAACGAGACCCAAGATTCGGAGGCTGAAGCCCCGCGTTTCGGGCGGCTGCCGAGGCGGCTCAACACCCAAAACCTGCTGCCATGGCGCACTTCTTGGCCACCGTGGAGCGCGACGCGGTGTCGGTGGTCGCCGGCAACAGCGTGCTCTCCTCGGCCAACATTGCGCGCCTCTCCGCCATGCTGGCACCTTCGCCGCTACCGGATGATCCGCCGCAGCCTCCTCTCCGGGAGCGGAGACCAAAGATCATCAGAATCATCAATGACAGGAGGAACAACATCAGGAGATGCTACAAGGGCTTGCTTGAGATGGCAGATGCCGCGCTGCGCAAGTATGCACACCAAACCGGGGAACAATATGAACTTCACACCATCTATGGCGAGACCTTCCGTAAGGATTATGAGGAGTTCCATGTGTATGTCCATATGAACTTCATGGCTTCTTCGTCTAGCTACAAGGCCCTGCAGGCTCCTCAACCTGTCTGCTTCTTTGCTGAAGCGCTTCGCCCGCCTCGCCCTGGCTATCATGAAGACGACATCACCTTGTGTTCCATTGTGCAACCATCACCAACTGACATCGATAGTTGCCATGGTTCTCTTGCAAATAACCACAGAATTGATCATCCGGAGGCTGGCATGCACTTCGTTGGGAAGCACAACAAGATGGATGGAAGTGACTATGACTGGGATTGGCCACACACAGCTGATGTCTATTACAGGTTTTTTGATCCTGACAGGGATGTTGGCCTTGTGGAGCACTTGTATAAAGTTATAACCCGTTTTAGTGCCCTGTATGGCGGATCCACGGATGAAGATGACAATGAAGATATCAC]
[+] EMBL AK106418             [GCAAACTGGGGAAGAATATGAGCTTCATACCATCTATGGTGAAGCCTTCCTCAAGGATCGCAACGAGCGTGCTGAGTATATCCACATCAATTTCATGGCTTCTCCCTCCAGCTGCCAGTGCCTGCAAGCTTCTCCAGTCTGCTTCTTTGCTGAAGTTCTTCGTCCACCACGCTTTAAGTATCATGAAGCCGACATCACTTTGTGCTGCATAGTGCGACCGTCGCCAAATGATGCCGATAGTTGCCATGGTTGTCTTATCGAGAACCACAGAATTGATCACCCGGAAGCTGGCATGCGTTTTTGTGGGAAGAAGCATAGCAAGATGGATCCAAATGGCTATGGCCATGGCTGGGATTGGCCAAGCATAGCTGACGTCGAATACAGGTTTTTTGATCCTGACAAGGACGTCGGACTTGTTGAGTACTTGGATGGAGTTATAACCGATATCAAAGCACGTATCAGAGACCTATCTATCAGGGATGAAGACGACAGTGACGAGGACAGTAGCGATGATGATATCTCCGGCTATTCCATGAGATTTGTCTGATGTTGTGATGCTCTAACTTGCAGTACTATTCTTCACCTACAACTTTCTCGAACAGTTATTTACTTACGTATAAATGTTTGAAACTACAGAGCTAGCTTAACGTTGGTGTTATTATTCTGAAATATTCTGTGGCAAGTATGACATAATGCACGATTGGTAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB638907             [                                                                   CGTGCTGAGTATATCCACATCAATTTCATGGCTTCTCCCTCCAGCTGCCAGTGCCTGCAAGCTTCTCCAGTCTGCTTCTTTGCTGAAGTTCTTCGTCCACCACGCTTTAAGTATCATGAAGCCGACATCACTTTGTGCTGCATAGTGCGACCGTCGCCAAATGATGCCGATAGTTGCCATGGTTGTCTTATCGAGAACCACAGAATTGATCACCCGGAAGCTGGCATGCGTTTTTGTGGGAAGAAGCATAGCAAGATGGATCCAAATGGCTATGGCCATGGCTGGGATTGGCCAAGCATAGCTGACGTCGAATACAGGTTTTTTGATCCTGACAAGGACGTCGGACTTGTTGAGTACTTGGATGGAGTTATAACCGATATCAAAGCACGTATCAGAGACCTATCTATCAGGGATGAAGACGACAGTGACGAGGACAGTAGCGATGATGATATCTCCGGCTATTCCATGAGATTTGTCTGATGTTGTGATGCTCTAACTTGCAGTACTATTCTTCACCTACAACTTTCTCGAACAGTTATTTACTTACGTATAAATGTTTGAAACTACAGAGCTAGCTTAACGATGGTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_4682#0 GCAAACTGGGGAAGAATATGAGCTTCATACCATCTATGGTGAAACCTTCCTCAAGGATCG CAACGAGCGTGCTGAGTATATCCACATCAATTTCATGGCTTCTCCCTCCAGCTGCCAGTG CCTGCAAGCTTCTCCAGTCTGCTTCTTTGCTGAAGTTCTTCGTCCACCACGCTTTAAGTA TCATGAAGCCGACATCACTTTGTGCTGCATAGTGCGACCGTCGCCAAATGATGCCGATAG TTGCCATGGTTGTCTTATCGAGAACCACAGAATTGATCACCCGGAAGCTGGCATGCGTTT TTGTGGGAAGAAGCATAGCAAGATGGATCCAAATGGCTATGGCCATGGCTGGGATTGGCC AAGCATAGCTGACGTCGAATACAGGTTTTTTGATCCTGACAAGGACGTCGGACTTGTTGA GTACTTGGATGGAGTTATAACCGATATCAAAGCACGTATCAGAGACCTATCTATCAGGGA TGAAGACGACAGTGACGAGGACAGTAGCGATGATGATATCTCCGGCTATTCCATGAGATT TGTCTGATGTTGTGATGCTCTAACTTGCAGTACTATTCTTCACCTACAACTTTCTCGAAC AGTTATTTACTTACGTATAAATGTTTGAAACTACAGAGCTAGCTTAACGTTGGTGTTATT ATTCTGAAATATTCTGTGGCAAGTATGACATAATGCACGATTGGTAGTTTTGGTTGTTTA GTGTAACTTTTGCAAATCGTATGTTGGCAAACGAGACCCAAGATTCGGAGGCTGAAGCCC CGCGTTTCGGGCGGCTGCCGAGGCGGCTCAACACCCAAAACCTGCTGCCATGGCGCACTT CTTGGCCACCGTGGAGCGCGACGCGGTGTCGGTGGTCGCCGGCAACAGCGTGCTCTCCTC GGCCAACATTGCGCGCCTCTCCGCCATGCTGGCACCTTCGCCGCTACCGGATGATCCGCC GCAGCCTCCTCTCCGGGAGCGGAGACCAAAGATCATCAGAATCATCAATGACAGGAGGAA CAACATCAGGAGATGCTACAAGGGCTTGCTTGAGATGGCAGATGCCGCGCTGCGCAAGTA TGCACACCAAACCGGGGAACAATATGAACTTCACACCATCTATGGCGAGACCTTCCGTAA GGATTATGAGGAGTTCCATGTGTATGTCCATATGAACTTCATGGCTTCTTCGTCTAGCTA CAAGGCCCTGCAGGCTCCTCAACCTGTCTGCTTCTTTGCTGAAGCGCTTCGCCCGCCTCG CCCTGGCTATCATGAAGACGACATCACCTTGTGTTCCATTGTGCAACCATCACCAACTGA CATCGATAGTTGCCATGGTTCTCTTGCAAATAACCACAGAATTGATCATCCGGAGGCTGG CATGCACTTCGTTGGGAAGCACAACAAGATGGATGGAAGTGACTATGACTGGGATTGGCC ACACACAGCTGATGTCTATTACAGGTTTTTTGATCCTGACAGGGATGTTGGCCTTGTGGA GCACTTGTATAAAGTTATAACCCGTTTTAGTGCCCTGTATGGCGGATCCACGGATGAAGA TGACAATGAAGATATCAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)