These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAGTTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCGCTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGCCATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTGTTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGTTGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGATATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA] [+] EMBL AU082495 [GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAGTTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCGCTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGCCATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTGTTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGTTGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGATATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA] consensusID : consensus_4686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [GCATCGCATTGACATCTCCGAGGAAAGCTTTGGTATATATTGTTGCGAAGTAGNGGCCGCCATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGNCGTCCGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCGTCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCCCGGCGCCGTCGAAGGGGCACGGGTGCAACGCTCAAGGACAAGACGTGCCGGCACGACGACCGCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGNTGCCGTCGTTCGACAACCACATGACCATC] [+] EMBL C73438 [GCATCGCATTGACATCTCCGAGGAAAGCTTTGGTATATATTGTTGCGAAGTAGNGGCCGCCATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGNCGTCCGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCGTCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCCCGGCGCCGTCGAAGGGGCACGGGTGCAACGCTCAAGGACAAGACGTGCCGGCACGACGACCGCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGNTGCCGTCGTTCGACAACCACATGACCATC] consensusID : consensus_4686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [TTTTTTTTTTTTTTTTTTTTAGGAGAATCACACTCTAGCAACAATTCTACATGACATTTTCCATCTTGTTTTCAACCTTTTTTTCCCCTTGGCTCGTCCTCT] [+] EMBL CA760622 [TTTTTTTTTTTTTTTTTTTTAGGAGAATCACACTCTAGCAACAATTCTACATGACATTTTCCATCTTGTTTTCAACCTTTTTTTCCCCTTGGCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4686#0 GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAG 60 consensus_4686#1 ---GCATC-GCATTGACAT-CTCCGAGGAAAG---CTTTGGTATATATTG-TTGCGAA-G 50 consensus_4686#2 ------------------------------------TTTTTTTTTTTTTTTTTTTTAG-- 22 *** * ** ** * consensus_4686#0 TTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGT 120 consensus_4686#1 TAGNGGCCGCCATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGT 110 consensus_4686#2 --GAGAATCACACTCTAGCAACAATTC-TACATGA-CATTTTCCATCTTGTTTTCAACCT 78 * ** *** * * * ** * ** ** * * * consensus_4686#0 GCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCC 180 consensus_4686#1 GCGCGATCGNCGTCCG-CTCTGCCCGCGCCGGCCACGCCAGCGGCCACGC-GTCGCCGCC 168 consensus_4686#2 TT---TTTTCCCCTTGGCTCGTCCTCT--------------------------------- 102 * * * *** ** consensus_4686#0 GACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCG 240 consensus_4686#1 GACGAGGAGGACGCCGCCGCCGCGGC-CCGGCGCCGTCGAAGGGGCACGGGTGCAA--CG 225 consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 CTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAA 300 consensus_4686#1 CTCAAGGACAAGACGTGCCGGCACGACGACCGC-ACGATCCGGAGAACCAGGAGGAGGAA 284 consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 GGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGAC 360 consensus_4686#1 GGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGAC 344 consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 GACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGC 420 consensus_4686#1 GACGAGNTGCCGTCGTTCGACAACCACATGACCATC------------------------ 380 consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 CATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTG 480 consensus_4686#1 ------------------------------------------------------------ consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 TTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGT 540 consensus_4686#1 ------------------------------------------------------------ consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 TGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGA 600 consensus_4686#1 ------------------------------------------------------------ consensus_4686#2 ------------------------------------------------------------ consensus_4686#0 TATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA 644 consensus_4686#1 -------------------------------------------- consensus_4686#2 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||