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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2330 fasta sequence
[TCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGACGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAA-TCCCGGGCGGCCAAGGAACTGCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATGGCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGCTTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACACTGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCGGGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCGCCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAGCCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGAGGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGACAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCGAGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCAGCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTAGTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCACCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTGCTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCGGAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGTTGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCTGCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGACGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGATGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGCGGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGCAGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGTCGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCGCGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGGACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGGAGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACACTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAAGAAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGC]
[+] EMBL AK107559 [TCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGACGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAA TCCCGGGCGGCCAAGGAACTGCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATGGCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGCTTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACACTGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCGGGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCGCCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAGCCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGAGGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGACAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCGAGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCAGCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTAGTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCACCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTGCTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCGGAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGTTGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCTGCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGACGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGATGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGCGGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGCAGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGTCGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCGCGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGGACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGGAGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACACTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAAGAAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGC]
[+] EMBL AU163542 [ ACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGTTGTCAACGTGCGATGGTGGTTGCGAGCCGTCGGAGGAAGCCGGGAGCCCGACGACGACGACGACGAAACGTNTNTACGGGTTTCGGACCAATTCCCGGG GGCCAAGGAAnt ]
consensusID : consensus_4689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[GACTAATGAACTAAGAAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGAGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTAT]
[+] EMBL CA763819 [GACTAATGAACTAAGAAATTAATTAATTAATTAATTAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATATATACATATTGTAGGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGACGTATTGCTTGGAGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4689#0 TCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCGTCGATCGAC 60
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGT 120
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGC 180
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 ACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGA 240
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATG 300
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 ATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGA 360
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAATCCCGGGCGGCCAAGGAACT 420
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATG 480
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGC 540
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 TTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACAC 600
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 TGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCG 660
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCG 720
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAG 780
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGA 840
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGA 900
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCG 960
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 AGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCA 1020
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTA 1080
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCA 1140
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTG 1200
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCG 1260
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGT 1320
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 TGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCT 1380
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGA 1440
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGA 1500
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 TGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGC 1560
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 GGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGC 1620
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 AGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGT 1680
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCG 1740
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGG 1800
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 ACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGG 1860
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 AGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACA 1920
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAAGAAATTAAT 1980
consensus_4689#1 ----------GACTAATGA--ACTAAGAAATTA-----ATTAATTAATTAATTAATTAAT 43
** * * ** * ** * * * **** ** *** *******
consensus_4689#0 TAATTAATTAATTAGTGCTAATCTAATCCATATATATATATA----CATATTGTAGGTGT 2036
consensus_4689#1 TAATTAATTAATTAGTGCTAATCTAATCCATATATATATATATATACATATTGTAGGTGT 103
****************************************** **************
consensus_4689#0 ACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGT 2096
consensus_4689#1 ACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCCAATGT 163
************************************************************
consensus_4689#0 AAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGA 2156
consensus_4689#1 AAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCTAGGGA 223
************************************************************
consensus_4689#0 CGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCT 2216
consensus_4689#1 CGTATTGCTTGGAGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGTTTCCT 283
************ ***********************************************
consensus_4689#0 TACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTT 2276
consensus_4689#1 TACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTATTTTTT 343
************************************************************
consensus_4689#0 CTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGC 2330
consensus_4689#1 CTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTAT------ 391
************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||