cluster # 469

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Oryza sativa
cluster # 469 cluster # 469 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_469#0 length = 583 sequences # 1

consensus_469#1 length = 329 sequences # 1

consensusID : consensus_469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGGTTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCTGCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTCTCTCTTTGCAGAGGTCAAGGTCGTCCACCCGGCGGACAGGTCGGCCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGTACGACGACCTGCCCCTCCCCCGCCTCCCCGCCCGCGTCGCCCACGAGCGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCAAGGGCAGCGTCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCAAGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGAAAGCAGCTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA]

[+] EMBL BI811209             [ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGGTTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCTGCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTCTCTCTTTGCAGAGGTCAAGGTCGTCCACCCGGCGGACAGGTCGGCCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGTACGACGACCTGCCCCTCCCCCGCCTCCCCGCCCGCGTCGCCCACGAGCGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCAAGGGCAGCGTCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCAAGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGAAAGCAGCTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA]




>consensus_469#0
ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGG
TTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCT
GCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTC
TCTCTTTGCAGAGGTCAAGGTCGTCCACCCGGCGGACAGGTCGGCCCGCCACCGCCGGCG
AGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGC
TCCTCCTCCGACCGTACGACGACCTGCCCCTCCCCCGCCTCCCCGCCCGCGTCGCCCACG
AGCGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCAAGGGCAGCG
TCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCAAGCGCAGCC
GCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGAAAGCAGCTG
CCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA

consensusID : consensus_469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [AAATCGAGATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGAGACAGGGAAAGAGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAATGAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTCGCGCCACGAGGCGGCCGAGCACGCCCACG]

[+] EMBL AU184825             [AAATCGAGATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGAGACAGGGAAAGAGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAATGAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTCGCGCCACGAGGCGGCCGAGCACGCCCACG]




>consensus_469#1
AAATCGAGATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGAGACAGGGAAAG
AGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAAT
GAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCC
GGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAA
GCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTC
GCGCCACGAGGCGGCCGAGCACGCCCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_469#0      ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGG 60
consensus_469#1      ---------------------------------------------------------AAA 3
                                                                              *  

consensus_469#0      TTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCT 120
consensus_469#1      TCGAG--ATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGA-GACAGGGAAAG 60
                     *       **  *  *    *     *   ***    ***    ** * **    *    

consensus_469#0      GCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTC 180
consensus_469#1      AGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAAT 120
                               * * **    *  *     *  * *     *    *  *  * ****   

consensus_469#0      TCTCTTTGCAG--AGGTCAAGGTCGTC-CACCCGGCGGACAGGTCGGC-CCGCCACCGCC 236
consensus_469#1      GAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCC 180
                               *  ************** ** ***************** ***********

consensus_469#0      GGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAA 296
consensus_469#1      GGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAA 240
                     ************************************************************

consensus_469#0      GCGCTCCTCCTCCGACCG-TACGACGACCTGCCCCTCCC-CCGCCTCC-CCGCCCGCGTC 353
consensus_469#1      GCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTC 300
                     ****************** ******************** ******** ***********

consensus_469#0      GC-CCACGAG-CGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCA 411
consensus_469#1      GCGCCACGAGGCGGCCGAGCACGCCCACG------------------------------- 329
                     ** ******* ******************                               

consensus_469#0      AGGGCAGCGTCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCA 471
consensus_469#1      ------------------------------------------------------------
                                                                                 

consensus_469#0      AGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGA 531
consensus_469#1      ------------------------------------------------------------
                                                                                 

consensus_469#0      AAGCAGCTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA 583
consensus_469#1      ----------------------------------------------------