cluster # 4709

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Oryza sativa
cluster # 4709 cluster # 4709 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4709#0 length = 1044 sequences # 2

consensus_4709#1 length = 598 sequences # 1

consensusID : consensus_4709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1044
fasta sequence

                              [TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACGGTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGCGGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAAGAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACATCGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGAAATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAATTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCTCGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGTAAACAGCATTGCTTGCATGTCATTGTTATT]

[+] EMBL AK099352             [TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACGGTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGCGGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAAGAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACATCGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGAAATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAATTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCTCGCGGTTAATAAGCGTA                                                                   ]
[+] EMBL AK059866             [ ACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACGGTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGCGGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAAGAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACATCGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGAAATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAATTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCTCGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGTAAACAGCATTGCTTGCATGTCATTGTTATT]




>consensus_4709#0
TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACG
GTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGC
GGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAA
GAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACAT
CGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGA
AATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAA
TTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACAC
ACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCT
TTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGC
ATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTT
ATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACA
GAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCT
TAACCTTCTTACTGGGTACATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGG
TTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCATTTTGTT
AGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTTTGTCAT
TGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTTTTTCCT
CGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGTAAACAG
CATTGCTTGCATGTCATTGTTATT

consensusID : consensus_4709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATGTAAAGGTCCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTTTGTTCTCTCCCTTTGTTCAAACTCTTCTACTGCAGGTACATATANCCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCAT]

[+] EMBL CF328929             [CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAATGATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTTCTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATGTAAAGGTCCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTTTGTTCTCTCCCTTTGTTCAAACTCTTCTACTGCAGGTACATATANCCTGGTTGATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCAT]




>consensus_4709#1
CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACACACAAAAT
GATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCTTTCCTTT
CGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGCATTTAGT
TCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTTATCATCA
AGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACAGAGACAT
GCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCTTAACCTT
CTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATGTAAAGGT
CCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTTTGTTCTC
TCCCTTTGTTCAAACTCTTCTACTGCAGGTACATATANCCTGGTTGATCGCCTCGGAAGA
GTGAGGTGGCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4709#0      TACTCCGTCCTCCTCTTCACCGGTTAGATCGGCGGCGGCGGCGGCGATGATGAGGGCACG 60
consensus_4709#1      ------------------------------------------------------------
                                                                                  

consensus_4709#0      GTGGGCGGCGGGGATGCTGCGCCGCGCTAGCTCTGGCGAGGCTTCGCTCGCCGCGCGCGC 120
consensus_4709#1      ------------------------------------------------------------
                                                                                  

consensus_4709#0      GGTCTTCGCGCGCGGCTTCCTCGGCCTCAACATGAAGGCGAGTAAGGAGACCATCGAGAA 180
consensus_4709#1      ------------------------------------------------------------
                                                                                  

consensus_4709#0      GAAGGAGAAGGATAAGGCCAGGCTTATGGATGAAATGAGCAGGGGGTACTTCGCCGACAT 240
consensus_4709#1      ------------------------------------------------------------
                                                                                  

consensus_4709#0      CGCAGAGATACGCAAGAACGGCGGCAAGCTTGCGACAGCGAATAAGATCATCATTCCGGA 300
consensus_4709#1      ------------------------------------------------------------
                                                                                  

consensus_4709#0      AATCGCAGCCGTGAAGTTCCCTGATCTTTCTGTGAAGTCCCCTGATGGCAGGACAGTGAA 360
consensus_4709#1      ------------------------------------------------------------
                                                                                  

consensus_4709#0      TTTGCCGCTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACAC 420
consensus_4709#1      -------CTTGTCGCACCTCCGCGAAACGATGATCCCCAGACTGGCAATACAGTGGACAC 53
                             *****************************************************

consensus_4709#0      ACAAAATGATGATTGTAAGGCTGGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCT 480
consensus_4709#1      ACAAAATGATGATTGTAAGGCTTGTGATATGGTGGTTCCTGATGCTTCATTGGTGTGCCT 113
                      ********************** *************************************

consensus_4709#0      TTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGC 540
consensus_4709#1      TTCCTTTCGCGCAAGCTCCCAGAAAATGGCAGAAACGTGGAGCCTACCTTTTCTTGATGC 173
                      ************************************************************

consensus_4709#0      ATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTT 600
consensus_4709#1      ATTTAGTTCTGCTGGGAATATTCAAGTGTATGAGGTCTCATTTATTGATTCATGGCTGTT 233
                      ************************************************************

consensus_4709#0      ATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACA 660
consensus_4709#1      ATCATCAAGTCCTGTGAGACAAGTATTCCTCAAGGTGATGACAAAATCCAACAATCCACA 293
                      ************************************************************

consensus_4709#0      GAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCT 720
consensus_4709#1      GAGACATGCTGTATATGCCTTTGGTGACCACTATTATTTCAGGAAGAAGCTTCATATCCT 353
                      ************************************************************

consensus_4709#0      TAACCTTCTTACTGGGTA------CATATACCTGGTTGATCGCCTCGGAAGAGTGAGGTG 774
consensus_4709#1      TAACCTTCTTACTGGGTAATGTTTCTTCCTTCCCGTTGTTCGTTTGGCAAACTTTAGATG 413
                      ******************      * *    *  **** ***  * * **   * ** **

consensus_4709#0      GCAAGGTTTCGGATCTGCGACGCAGGAAGAGTTGTCATCGCTAACTGCATGTACCTCCAT 834
consensus_4709#1      TAAAGGTCCTGGTTACCACATACTGGGCGATGTTTCCTCCTTCCCTTCGTTTATATGTTT 473
                        *****   ** *     *  * **  **  * ** **  *  ** * * **  *   *

consensus_4709#0      TTTGTTAGATGGAAAATGAGATTTAGATGGATACTGAAATATTTGGGGTTGGAGAAATTT 894
consensus_4709#1      TGTTCTCTCCCTTTGTTCAAACTCTTCTAC-TGCAGGTACATATANCCTGG-------TT 525
                      * *  *          * * * *    *   * * *  * ** *    * *       **

consensus_4709#0      TGTCATTGCGAATCCATAGCTGTATCACCTCTCGTTTCAGCATATTGAGGGATGATTTTT 954
consensus_4709#1      GATCGCCTCGGAAGAGTGAGGTGGCAAGGTTTCGGATCTGCG-ACGCAGGAAGAGTTGTC 584
                        **    ** *    *         *  * ***  ** **  *   *** *   ** * 

consensus_4709#0      TTTCCTCGCGGTTAATAAGCGTAAATTGGATTGATTTTCTCCTGCCCAATGACATTGTGT 1014
consensus_4709#1      ATCGCTAACTGCAT---------------------------------------------- 598
                       *  **  * *                                                 

consensus_4709#0      AAACAGCATTGCTTGCATGTCATTGTTATT 1044
consensus_4709#1      ------------------------------