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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1127 fasta sequence
[CAGGAAGTACCAGGACTAGGTGGAGGTGGAACTAAAACCAAGGGAGTGCATCCCGTCCCTGACCTGTAACCATTATCAATCATGCTCGATGGGCAAGAGCACTGAAATCCTCCTGGAGTGTTGTTGCAGTACTGTGTGAAGGTGCAAGGGTTCTTTCCATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGTAAGGATTCCCTCAAAGCCCTGACGGCAATTGCAGAGACAGCCCTCTCCCCGAGCGAGTCGAAGCATTCGCCTTGCATTTATCCGGTGGAGCAAGCTTGCTGCTGCCTCTTGTTGCTTCCTCGCTGCCGTTGTTACCGATTGCCTAGTCTAAGCTCAGGTCGTGAGCTGCAGGAGTGGCTAGCGATGGCGTCTGAGC-TGCCC-TGG-CACGCGG-TGGCGCAGGTGG-TTATGCTTGCTG-CAGCCGACGG-CCATCAGCG-TGTTCCT-CCCGGAGAAGGCGAACGGCGT--CCCGGCAAGGT-CCATG-AGT-CCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGG-CAGGGTGTCGACCG-CCGCCGACGCTGCTGCAGGCGTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTATTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACATCGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACGTTTAAAAAAA]
[+] EMBL AK108578 [CAGGAAGTACCAGGACTAGGTGGAGGTGGAACTAAAACCAAGGGAGTGCATCCCGTCCCTGACCTGTAACCATTATCAATCATGCTCGATGGGCAAGAGCACTGAAATCCTCCTGGAGTGTTGTTGCAGTACTGTGTGAAGGTGCAAGGGTTCTTTCCATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGTAAGGATTCCCTCAAAGCCCTGACGGCAATTGCAGAGACAGCCCTCTCCCCGAGCGAGTCGAAGCATTCGCCTTGCATTTATCCGGTGGAGCAAGCTTGCTGCTGCCTCTTGTTGCTTCCTCGCTGCCGTTGTTACCGATTGCCTAGTCTAAGCTCAGGTCGTGAGCTGCAGGAGTGGCTAGCGATGGCGTCTGAGC TGCCC TGG CACGCGG TGGCGCAGGTGG TTATGCTTGCTG CAGCCGACGG CCATCAGCG TGTTCCT CCCGGAGAAGGCGAACGGCGT CCCGGCAAGGT CCATG AGT CCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGG CAGGGTGTCGACCG CCGCCGACGCTGCTGCAGGCGTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTATTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACATCGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACG ]
[+] EMBL AU057031 [ aAGCTTNCCCTTGGCCACCCGGTTGCCCCAGGTGGTTTATNCTTGCTGCCACCCAACGGCCCATCAGCGTTTTTCNTCCCCGGAGAAGGCGAACGGCCTTCCCCGGCAAGGTCCCATGAANTCCCGGTTCCGTTGNCCTCTGTGCGGTTGCCGAAGGGNAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCCAGGGTGTCGACCGCCCGCCGACGCTGCTGCAGGCGTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTATTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACATCGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACGTTTAAAAAAA]
consensusID : consensus_4711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[ATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGCGGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGAAGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGTCGACCGCCGCCGACGCTGCTGCAGGCGTTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAATTTGCTTTTCTGTAAGTTATTCTAGC]
[+] EMBL AU057030 [ATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGAAGGCGCTTACCTTGGCACCCGACATCCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGCGGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGAAGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGCCGAAGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGTCGACCGCCGCCGACGCTGCTGCAGGCGTTCGACACGTTGCTCTATCGATGATCGACGGAGGCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCCGTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCCGTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTGGCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTACCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAATTTGCTTTTCTGTAAGTTATTCTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4711#0 CAGGAAGTACCAGGACTAGGTGGAGGTGGAACTAAAACCAAGGGAGTGCATCCCGTCCCT 60
consensus_4711#1 ------------------------------------------------------------
consensus_4711#0 GACCTGTAACCATTATCAATCATGCTCGATGGGCAAGAGCACTGAAATCCTCCTGGAGTG 120
consensus_4711#1 ------------------------------------------------------------
consensus_4711#0 TTGTTGCAGTACTGTGTGAAGGTGCAAGGGTTCTTTCCATGCATGGTCTTCCTCTTCCAG 180
consensus_4711#1 ------------------------------------------------------------
consensus_4711#0 CTCCGGAAACAAGTAGGAGTATCTATATATCTGAAGGTGCAATGCAAATGTCTGAAAAGA 240
consensus_4711#1 ------------------------------------------------------------
consensus_4711#0 AGGCGCTTACCTTGGCACCCGACATCCAGGTAAGGATTCCCTCAAAGCCCTGACGGCAAT 300
consensus_4711#1 ------------------------------------------------------------
consensus_4711#0 TGCAGAGACAGCCCTCTCCCCGAGCGAGTCGAAGCATTCGCCTTGCATTTATCCGGTGGA 360
consensus_4711#1 --------------------------ATGCATGGTCTTCCTCTTCCAGCTCCGGAAACAA 34
* * * *** *** ** * *
consensus_4711#0 GCAAGCTTGCTGCTGCCTCTTGTTGCTTCCTCGCTGCCGTTGTTACCGATTGCCTAGTCT 420
consensus_4711#1 GTAGGAGTATCTATATATCT-GAAGGTGCAATGCAAATGTCTGAAAAGAAGGC----GCT 89
* * * * * *** * * * * ** ** * ** ** **
consensus_4711#0 AAGCTCAGGTCGTGAGCTGCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGC 480
consensus_4711#1 TACCTTGGCACCCGACATCCAGGAGTGGCTAGCGATGGCGTCTGAGCTGCCCTGGCACGC 149
* ** * * ** * *****************************************
consensus_4711#0 GGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGA 540
consensus_4711#1 GGTGGCGCAGGTGGTTATGCTTGCTGCAGCCGACGGCCATCAGCGTGTTCCTCCCGGAGA 209
************************************************************
consensus_4711#0 AGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGC 600
consensus_4711#1 AGGCGAACGGCGTCCCGGCAAGGTCCATGAGTCCGGTTCCGTTGGCCTCTGTGCGGTTGC 269
************************************************************
consensus_4711#0 CGAAGGGGAGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGT 660
consensus_4711#1 CGAAGGG-AGGGGAGCATTCAGGCAGCTAACGTTCGGGTTTAGCGGCAGAGGCAGGGTGT 328
******* ****************************************************
consensus_4711#0 CGACCGCCGCCGACGCTGCTGCAGGCGT-CGACACGTTGCTCTATCGATGATCGACGGAG 719
consensus_4711#1 CGACCGCCGCCGACGCTGCTGCAGGCGTTCGACACGTTGCTCTATCGATGATCGACGGAG 388
**************************** *******************************
consensus_4711#0 GCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCC 779
consensus_4711#1 GCAAGCTTGGACGACGAACAAGAAAGGCCGTGCGTGCATGGCCGGACAATGGTTGGGTCC 448
************************************************************
consensus_4711#0 GTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCC 839
consensus_4711#1 GTCTCGTGTAGTGTAACTAGTGAAGCGTGCAACACCGTGCGTGTGAGTTGTGATGCGCCC 508
************************************************************
consensus_4711#0 GTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTG 899
consensus_4711#1 GTTCACTGACGTCCAAATTAGGGGCCTTGACGAGATGACTGGGGAATGTGGAAGTCTTTG 568
************************************************************
consensus_4711#0 GCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTA 959
consensus_4711#1 GCCTGCGAGGTTGTCCTGGTCTCCAAGGTCTCCACGAGGCGCCAACAGGGGCTGGTTTTA 628
************************************************************
consensus_4711#0 CCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAAATTTGCTTTTCTGTAAGTTA 1019
consensus_4711#1 CCATGTGCGGATATTGAAGCATGTTGCATGTTTTGTTCAA-TTTGCTTTTCTGTAAGTTA 687
**************************************** *******************
consensus_4711#0 TTCTAGCCTGGCTTTGAACTCATCGAGACTTATTTACTCTGAGATCCAGTTGAGTTACAT 1079
consensus_4711#1 TTCTAGC----------------------------------------------------- 694
*******
consensus_4711#0 CGTCGAAGAGCTTATAAGTTATAAGCAATGCTCATACGTTTAAAAAAA 1127
consensus_4711#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||