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Oryza sativa
cluster # 4712 cluster # 4712       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4712#0 length = 1371 sequences # 3  

consensusID : consensus_4712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1371
fasta sequence
                              [AGAACCATCACTTGGTACCAGTAGTGCAACAACTTGTTCAGTCGAGAGGAATACCTTCTAGCCTTCTAGTAGCCAGGATGGCCATGGAGAGAGCTTGGAAGCCAAGGGAAATTGCTGACACTTTTGGCATTGAGATGGATGAAGAGGAGGCTGCGGCTGCGGCGATACCGCCTCCGCAGACGCCATTGGAGCCCATGGAGTACCTGTCGAGGTCATGGAGCGTGTCAGCGTCAGAGATATCCAAGATCCTTTTCAACGGGAGCAAGAAGAGCTTTGCCGCCAAGCGTCTGCCGGAGATGACCATACCGGAAAACTCTGTGGTCGCTGCGTCCATTGTTCCCAGCCATCTGCAACATATAGACACAAGAAGGAA-TTCAA-TCAGCAGCCACCACCTGCCAATTGGGAGGTGGTTCCAACACAAGGAGGCAAGCCGGGTCAAGCAGAGCAGCAAAGAGAAGCTGCGAGCCGAGAAGGCCCATGTACACGCCATGGTGTCGGTGGCCCGGGTCGCAGCTGCCGTTGCTGCGGTTACCGCGGCCACCACGAGCTCAGATATCCAGACCTCCAAGATGGCCGCGGCCATGGTGTCGGCCACCGAGCTATTGGCTTCGCACTGCGTGGAGATCGCGCAGCACGCGGGGGCACGCCATGAGCAGGTGGCCTGTGCCATCCAGTCTGCAGTTGGTGTTAGAAGCTCTGGTGATCTGATGACACTCACAGCAGCAGCAGCTACTGCTCTTCGAGGAGCCGCAACAATGAAGCAGAGAGTGCAGCGAGAGATGAGAAGCAATGCGAGTGTTCTTCCGTATGAGAAGGGTCACTCATGGAGTCCTGACATCTGGTGCAAGGAGGGGGAGTTACTGAAACGCACAAGAAAAGGAGATTTACACAAGACACGAGTATCTATATACATCAACAAGAGGTCACAGGTCATATTGAAGTTGAAGAGTAAACACATAGGAGGAGCACTATCAAAGAAGAACAAGAGTGTGGTTTTTGGTGTGTACAACGAGCTTCCCACATGGGTTGAGGCAGGGAAACATTTCACAGAGGAGAGATGCTGCTTTGGCCTGAGCACGGCACAAGGTCTGGTAGAGTTTGAGTGTGAGAACAGCACAAGTAAACAGAGGTGGGTCGATGATGTGAAGAATCTGCTTCGGCAGGTCGCTGCAGAAGAGCAAGTGGAAAATAAGTTGGGATCAGTGAAGCTCAGTTGATGTAGTTCATACATGTGTACACTATTTTCATGTTGGCAGGTGGTATACCATAGAAGGTGCCTTATTGATGCCAGGCGTATATATTGTTGTACTCTTAAATTGTCAGGTAGTTTTGTACTGTACACACAAAATGATAAGATACATAATAGATCAT]

[+] EMBL AK066334             [AGAACCATCACTTGGTACCAGTAGTGCAACAACTTGTTCAGTCGAGAGGAATACCTTCTAGCCTTCTAGTAGCCAGGATGGCCATGGAGAGAGCTTGGAAGCCAAGGGAAATTGCTGACACTTTTGGCATTGAGATGGATGAAGAGGAGGCTGCGGCTGCGGCGATACCGCCTCCGCAGACGCCATTGGAGCCCATGGAGTACCTGTCGAGGTCATGGAGCGTGTCAGCGTCAGAGATATCCAAGATCCTTTTCAACGGGAGCAAGAAGAGCTTTGCCGCCAAGCGTCTGCCGGAGATGACCATACCGGAAAACTCTGTGGTCGCTGCGTCCATTGTTCCCAGCCATCTGCAACATATAGACACAAGAAGGAA TTCAA TCAGCAGCCACCACCTGCCAATTGGGAGGTGGTTCCAACACAAGGAGGCAAGCCGGGTCAAGCAGAGCAGCAAAGAGAAGCTGCGAGCCGAGAAGGCCCATGTACACGCCATGGTGTCGGTGGCCCGGGTCGCAGCTGCCGTTGCTGCGGTTACCGCGGCCACCACGAGCTCAGATATCCAGACCTCCAAGATGGCCGCGGCCATGGTGTCGGCCACCGAGCTATTGGCTTCGCACTGCGTGGAGATCGCGCAGCACGCGGGGGCACGCCATGAGCAGGTGGCCTGTGCCATCCAGTCTGCAGTTGGTGTTAGAAGCTCTGGTGATCTGATGACACTCACAGCAGCAGCAGCTACTGCTCTTCGAGGAGCCGCAACAATGAAGCAGAGAGTGCAGCGAGAGATGAGAAGCAATGCGAGTGTTCTTCCGTATGAGAAGGGTCACTCATGGAGTCCTGACATCTGGTGCAAGGAGGGGGAGTTACTGAAACGCACAAGAAAAGGAGATTTACACAAGACACGAGTATCTATATACATCAACAAGAGGTCACAGGTCATATTGAAGTTGAAGAGTAAACACATAGGAGGAGCACTATCAAAGAAGAACAAGAGTGTGGTTTTTGGTGTGTACAACGAGCTTCCCACATGGGTTGAGGCAGGGAAACATTTCACAGAGGAGAGATGCTGCTTTGGCCTGAGCACGGCACAAGGTCTGGTAGAGTTTGAGTGTGAGAACAGCACAAGTAAACAGAGGTGGGTCGATGATGTGAAGAATCTGCTTCGGCAGGTCGCTGCAGAAGAGCAAGTGGAAAATAAGTTGGGATCAGTGAAGCTCAGTTGATGTAGTTCATACATGTGTACACTATTTTCATGTTGGCAGGTGGTATACCATAGAAGGTGCCTTATTGATGCCAGGCGTATATATTGTTGTACTCTTAAATTGTCAGGTAGTTTTGTACTGTACACACAAAATGATAAGATACATAATAGATCAT]
[+] EMBL C27059               [                   AGTAGTGCAACAACTTGTTCAGTCGANAGGAATACCTTCTAGCCTTCTAGTAGCCAGGATGGCCATGGAGAGAGCTTGGAAGCCAAGGGAAATTGCTGACACTTTTGGCATTNANATGGATGAAGAGGAGGCTGCGGCTGCGGCGATACCGCCTCCGCAGACGCCATTGGAGCCCATGGAGTACCTGTCGAGGTCATGGAGCGTGTNAGCNTCAGAANTATCCAAGATCCTTTTCAACGGGNGCANGAAGAGCTTTGCCGNCAAGCNTCTGCCGGAGATGACCATACCGGAAAACTCTGTGGTCGCTGCGTCCATTGTTCCCAGNCATCTGCAACATATAGACACANGAAGGAATTTCAATTCAGCAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK059709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCTTTGGCCTGAGCACGGCACAAGGTCTGGTAAAGTTTGAGTGTGAGAACAGCACAAGTAAACAGAGGTGGGTCGATGATGTGAAGAATCTGCTTCGGCAGGTCGCTGCAGAAGAGCAAGTGGAAAATAAGTTGGGATCAGTGAAGCTCAGTTGATGTAGTTCATACATGTGTACACTATTTTCATGTTGGCAGGTGGTATACCATAGAAGGTGCCTTATTGATGCCAGGCGTATATATTGTTGTACTCTTAAATTGTCAGGTAGTTTTGTACTGTACACACAAAATGATAAGATACATAATAGATCAT]


>consensus_4712#0 AGAACCATCACTTGGTACCAGTAGTGCAACAACTTGTTCAGTCGAGAGGAATACCTTCTA GCCTTCTAGTAGCCAGGATGGCCATGGAGAGAGCTTGGAAGCCAAGGGAAATTGCTGACA CTTTTGGCATTGAGATGGATGAAGAGGAGGCTGCGGCTGCGGCGATACCGCCTCCGCAGA CGCCATTGGAGCCCATGGAGTACCTGTCGAGGTCATGGAGCGTGTCAGCGTCAGAGATAT CCAAGATCCTTTTCAACGGGAGCAAGAAGAGCTTTGCCGCCAAGCGTCTGCCGGAGATGA CCATACCGGAAAACTCTGTGGTCGCTGCGTCCATTGTTCCCAGCCATCTGCAACATATAG ACACAAGAAGGAATTCAATCAGCAGCCACCACCTGCCAATTGGGAGGTGGTTCCAACACA AGGAGGCAAGCCGGGTCAAGCAGAGCAGCAAAGAGAAGCTGCGAGCCGAGAAGGCCCATG TACACGCCATGGTGTCGGTGGCCCGGGTCGCAGCTGCCGTTGCTGCGGTTACCGCGGCCA CCACGAGCTCAGATATCCAGACCTCCAAGATGGCCGCGGCCATGGTGTCGGCCACCGAGC TATTGGCTTCGCACTGCGTGGAGATCGCGCAGCACGCGGGGGCACGCCATGAGCAGGTGG CCTGTGCCATCCAGTCTGCAGTTGGTGTTAGAAGCTCTGGTGATCTGATGACACTCACAG CAGCAGCAGCTACTGCTCTTCGAGGAGCCGCAACAATGAAGCAGAGAGTGCAGCGAGAGA TGAGAAGCAATGCGAGTGTTCTTCCGTATGAGAAGGGTCACTCATGGAGTCCTGACATCT GGTGCAAGGAGGGGGAGTTACTGAAACGCACAAGAAAAGGAGATTTACACAAGACACGAG TATCTATATACATCAACAAGAGGTCACAGGTCATATTGAAGTTGAAGAGTAAACACATAG GAGGAGCACTATCAAAGAAGAACAAGAGTGTGGTTTTTGGTGTGTACAACGAGCTTCCCA CATGGGTTGAGGCAGGGAAACATTTCACAGAGGAGAGATGCTGCTTTGGCCTGAGCACGG CACAAGGTCTGGTAGAGTTTGAGTGTGAGAACAGCACAAGTAAACAGAGGTGGGTCGATG ATGTGAAGAATCTGCTTCGGCAGGTCGCTGCAGAAGAGCAAGTGGAAAATAAGTTGGGAT CAGTGAAGCTCAGTTGATGTAGTTCATACATGTGTACACTATTTTCATGTTGGCAGGTGG TATACCATAGAAGGTGCCTTATTGATGCCAGGCGTATATATTGTTGTACTCTTAAATTGT CAGGTAGTTTTGTACTGTACACACAAAATGATAAGATACATAATAGATCAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)