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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1137 fasta sequence
[ACTTGCCCGCAAAATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGAACCTCTTTTGTCATATGTGGTTGGTCATGAACCTCGTCAGTTACTCTCCATACCTGTGAACCACCACTGGAAATATTCTTGGATATCGAAGATGTCATGTTTGACTGCTGATGTAGTTTACATGCACTCTGTTCAATTTGAGAAATGGAATGCTTTGTATATTTTTTCAAGTAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTGTGGATAATGATATATACTTTTCCCCTGAAATCATTTTCTGTAGCCGGCATATACAAATATGTTGGTTG]
[+] EMBL AK071792 [ACTTGCCCGCAAAATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGAACCTCTTTTGTCATATGTGGTTGGTCATGAACCTCGTCAGTTACTCTCCATACCTGTGAACCACCACTGGAAATATTCTTGGATATCGAAGATGTCATGTTTGACTGCTGATGTAGTTTACATGCACTCTGTTCAATTTGAGAAATGGAATGCTTTGTATATTTTTTCAAGTAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTGTGGATAATGATATATACTTTTCCCCTGAAATCATTTTCTGTAGCCGGCATATACAAATATGTTGGTTG]
consensusID : consensus_4714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence
[AATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACT--TGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTT-ATAAAGGTTAT-ATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGT-AATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGTGAGCTTCTAAGACGGTTTGAATCTTTTTTACTAGTTCATGGTATACTCTAAATCCAACAAACCACTAATAGCTTTTGTGTTTCACATATTTAGTATGCTACACATTTCGTTAACATGATAGCATGGACAACATTTTTGTTTAACTCTTGCAATCTCAAGTTTACATAATGTTGCAA]
[+] EMBL AY164903 [AATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCATTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAGAGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCCTCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCACCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACT TGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCCTCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTT ATAAAGGTTAT ATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGT AATGTTTTCTCTGTTAGTTCCACCATTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTTTTGCTACATTGGGTGAGCTTCTAAGACGGTTTGAATCTTTTTTACTAGTTCATGGTATACTCTAAATCCAACAAACCACTAATAGCTTTTGTGTTTCACATATTTAGTATGCTACACATTTCGTTAACATGATAGCATGGACAACATTTTTGTTTAACTCTTGCAATCTCAAGTTTACATAATGTTGCAA]
[+] EMBL C26978 [ GCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGNC ACTTNTGGTGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCA GTGGNTGTGGTTCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTNATGGCCAACGCCCTGCTCCTCCTCGTNGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCACCACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTGTATGGNTCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTAATAAAGGTTATAATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTTAACTTCCTTAAGNTCATTTACATTGGTGTAAATGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4714#0 ACTTGCCCGCAAAATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCA 60
consensus_4714#1 ------------AATTGCAATAACTCACCATAATATTTCAAAATAATTCGACGGAATTCA 48
************************************************
consensus_4714#0 TTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAG 120
consensus_4714#1 TTCGCTCGCGCCGTCTCCGAAACCGAATCCATTTCCTGATCCAGCAAAGGACACAGAGAG 108
************************************************************
consensus_4714#0 AGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCC 180
consensus_4714#1 AGATCCCATCTCGTCCTCGTCGCCTCCGCCTCGTGAGCTCCACTCACCTACCCCACTTCC 168
************************************************************
consensus_4714#0 TCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCA 240
consensus_4714#1 TCTCCTCGCTTCGGCCGCGGCCCCAAACCCTAACCCTCCCCGCGGCGATCCCGATGGCCA 228
************************************************************
consensus_4714#0 CCACC---TCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGG 297
consensus_4714#1 CCACCACCTCCCGCCGATCCCTCCACGCCCTCCTCGGCGGCGGCGCAGTCGCCGACTTGG 288
***** ****************************************************
consensus_4714#0 TGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGT 357
consensus_4714#1 TGCTGTGGCGGCGGAGGAACGTGTCCGCGGCGGCCGTGGCGGGCGCCACGGCGGTGTGGT 348
************************************************************
consensus_4714#0 TCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCC 417
consensus_4714#1 TCCTCTTCGAGCGCGCGGGGTACAGCTTCCCGTCAGTCATGGCCAACGCCCTGCTCCTCC 408
************************************************************
consensus_4714#0 TCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCAC 477
consensus_4714#1 TCGTCGCCATCCTCTTCTTCTGGGCCAAGTCCGCCTCGCTGCTCAACAGGCCTCTTCCAC 468
************************************************************
consensus_4714#0 CACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTG 537
consensus_4714#1 CACTCCCTAAACTAGAGGTCTCAGATGTGGTTGTTGAGAAAGCTGCAGATCGGGCTCTTG 528
************************************************************
consensus_4714#0 TATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTG 597
consensus_4714#1 TATGGATCAACAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTG 588
************************************************************
consensus_4714#0 TTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACT 657
consensus_4714#1 TTTTTATAAAGGTTATATTGATTTTATGGGTGGTTTCATACATTGGAATGCTCTTCAACT 648
************************************************************
consensus_4714#0 TCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGA 717
consensus_4714#1 TCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCATTGTATGAGA 708
************************************************************
consensus_4714#0 AGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACT 777
consensus_4714#1 AGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACT 768
************************************************************
consensus_4714#0 TAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGG 837
consensus_4714#1 TAGATACCATCATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGG 828
************************************************************
consensus_4714#0 TGTTTTTGCTACATTGGG--AACCTCTTTTGTCATATGTGGTTGGTCATGAACCTCGTCA 895
consensus_4714#1 TGTTTTTGCTACATTGGGTGAGCTTCTAAGACGGTTTGAATCTTTTTTACTAGTTCATGG 888
****************** * * *** * ** * * * ** *
consensus_4714#0 GTTACTCTCCATACCTGTGAACCACCACTGGAAATATTCTT--GGATATCGAAGATGT-- 951
consensus_4714#1 TATACTCTAAAT-CCAACAAACCACTAATAGCTTTTGTGTTTCACATATTTAGTATGCTA 947
****** ** ** ****** * * * * * ** **** * ***
consensus_4714#0 CATGTTTGACTGCTGATGTAGTTT--ACATGCACTCTGTTCAATTTGAGAAATGGAATGC 1009
consensus_4714#1 CACATTTCGTTAACATGATAGCATGGACAACATTTTTGTTTAACTCTTGCAATCTCAAG- 1006
** *** * *** * *** * **** ** * * *** * *
consensus_4714#0 TTTGTATATTTTTTCAAGTAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTG 1069
consensus_4714#1 TTTACATAATGTTGCAA------------------------------------------- 1023
*** *** * ** ***
consensus_4714#0 TGGATAATGATATATACTTTTCCCCTGAAATCATTTTCTGTAGCCGGCATATACAAATAT 1129
consensus_4714#1 ------------------------------------------------------------
consensus_4714#0 GTTGGTTG 1137
consensus_4714#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||