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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4716 cluster # 4716       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4716#0 length = 384 sequences # 2  
consensus_4716#1 length = 213 sequences # 1  

consensusID : consensus_4716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 384
fasta sequence
                              [ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGCCGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGAGTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGCANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGTGGTCAAGACGCACCTNCAGGTTGC]

[+] EMBL CB674971             [ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGCCGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGAGTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAG                                                                                                                                                                    ]
[+] EMBL AU069404             [                                                                                                                                                                                 GGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGCANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGTGGTCAAGACGCACCTNCAGGTTGC]


>consensus_4716#0 ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGC CGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGA GTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGG TGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGC ANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTT CTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGT GGTCAAGACGCACCTNCAGGTTGC



consensusID : consensus_4716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence
                              [TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC]

[+] EMBL AU183894             [TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC]


>consensus_4716#1 TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCG GCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGC GGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCT GCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4716#0      ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGC 60
consensus_4716#1      ------------------------------------------------------------
                                                                                  

consensus_4716#0      CGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGA 120
consensus_4716#1      ------------------------------------------------------------
                                                                                  

consensus_4716#0      GTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGG 180
consensus_4716#1      ------------------------------------------------------------
                                                                                  

consensus_4716#0      TGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGC 240
consensus_4716#1      ---------------TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGC 45
                                     ************************************ ** ** **

consensus_4716#0      ANTNGANGATCCGGCNGCTGCAGGNAG-GNTGAACTGGGAGATGCTGGACAAGTCGCGGT 299
consensus_4716#1      CGATGAG-ATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGT 104
                          **  ******* ***** **  * * ******************************

consensus_4716#0      TCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCG 359
consensus_4716#1      TCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCG 164
                      ************** * ************ ** ******* *********** *******

consensus_4716#0      TGGTCAAGACGCACCTNCAGGTTGC------------------------ 384
consensus_4716#1      TGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC 213
                      **************** ***** **                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)