These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence [ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGCCGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGAGTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGCANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGTGGTCAAGACGCACCTNCAGGTTGC] [+] EMBL CB674971 [ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGCCGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGAGTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAG ] [+] EMBL AU069404 [ GGGTGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGCANTNGANGATCCGGCNGCTGCAGGNAGGNTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCGTGGTCAAGACGCACCTNCAGGTTGC] consensusID : consensus_4716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC] [+] EMBL AU183894 [TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGCCGATGAGATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGTTCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCGTGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4716#0 ATCCCTCCCTTTGATCTTCCTTTTTCCTTTTTGTTTTCTTGCGATCGCCGGAGTTGGTGC 60 consensus_4716#1 ------------------------------------------------------------ consensus_4716#0 CGTCGGTGACCGGGGTTTTTTGGTTGTTCGCCGGAGATGGTTCATCTGGTCGTGGCTTGA 120 consensus_4716#1 ------------------------------------------------------------ consensus_4716#0 GTTGTTTGGATCTGGATTTGGTAGGTGAGTAGTAGTACTAAGGTGTTTGGAAGGCGAGGG 180 consensus_4716#1 ------------------------------------------------------------ consensus_4716#0 TGGAAGGATGAGCTTTGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCNGCNGCNGC 240 consensus_4716#1 ---------------TGGTGTTGTGGATATGGATGAGGAGGGCGGGGCGGCGGCGGCGGC 45 ************************************ ** ** ** consensus_4716#0 ANTNGANGATCCGGCNGCTGCAGGNAG-GNTGAACTGGGAGATGCTGGACAAGTCGCGGT 299 consensus_4716#1 CGATGAG-ATCCGGCGGCTGCCGGCGGAGGTGAACTGGGAGATGCTGGACAAGTCGCGGT 104 ** ******* ***** ** * * ****************************** consensus_4716#0 TCTTCGTCCTCGGCNCNGCGCTCTTCTCGAGCNTCTCCGCNGCGCTGTACCCNGCCGTCG 359 consensus_4716#1 TCTTCGTCCTCGGCGCGGCGCTCTTCTCGGGCGTCTCCGCGGCGCTGTACCCGGCCGTCG 164 ************** * ************ ** ******* *********** ******* consensus_4716#0 TGGTCAAGACGCACCTNCAGGTTGC------------------------ 384 consensus_4716#1 TGGTCAAGACGCACCTGCAGGTGGCGCCGCCGNCACAGGCGGNCACCGC 213 **************** ***** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||