cluster # 472

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Oryza sativa
cluster # 472 cluster # 472 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_472#0 length = 733 sequences # 1

consensus_472#1 length = 695 sequences # 1

consensusID : consensus_472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence

                              [CATCAAATAAATTTATAATCCCAGTTGAGTATACTAAACTAAACATAACCGGCACATGAAAATGTGGAAATAAATTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAACATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTTCTGAGAGTGAGGTGCTAGATATTGTGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGGTGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAGAAGCTTAAATGTGTTGGCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTGGCCTTACACTTATTAAAGGGTGGGAGCACAGCACCCCTATATTTAGTGCTAGGCAGGCCTCATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTATGCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGAATGACAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACTCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTATCCGTGCATTTGT]

[+] EMBL CB630493             [CATCAAATAAATTTATAATCCCAGTTGAGTATACTAAACTAAACATAACCGGCACATGAAAATGTGGAAATAAATTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAACATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTTCTGAGAGTGAGGTGCTAGATATTGTGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGGTGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAGAAGCTTAAATGTGTTGGCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTGGCCTTACACTTATTAAAGGGTGGGAGCACAGCACCCCTATATTTAGTGCTAGGCAGGCCTCATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTATGCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGAATGACAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACTCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTATCCGTGCATTTGT]




>consensus_472#0
CATCAAATAAATTTATAATCCCAGTTGAGTATACTAAACTAAACATAACCGGCACATGAA
AATGTGGAAATAAATTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAAC
ATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTT
CTGAGAGTGAGGTGCTAGATATTGTGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGG
TGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAGAAGCTTAAATGTGTTG
GCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTG
GCCTTACACTTATTAAAGGGTGGGAGCACAGCACCCCTATATTTAGTGCTAGGCAGGCCT
CATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTAT
GCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGAATGA
CAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAA
GAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCA
CTCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTA
TCCGTGCATTTGT

consensusID : consensus_472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [TTTTTTTTTTTTTTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAACATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTTCTGAGAGTGAGGTGCTAGATATTGGGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGGTGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAAAAGCTTAAATGTGTTGGCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTGGCCTTACGCTTATTAAAGGGTGGGAGCACAGCAACCCTATATTTAGTGCTAGGCAGGCCTCATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTATGCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGCATGACAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACTNCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTATCCGTGCATTTGTGTCGTTATCGAGGAGTACATTGC]

[+] EMBL CA759826             [TTTTTTTTTTTTTTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAACATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTTCTGAGAGTGAGGTGCTAGATATTGGGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGGTGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAAAAGCTTAAATGTGTTGGCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTGGCCTTACGCTTATTAAAGGGTGGGAGCACAGCAACCCTATATTTAGTGCTAGGCAGGCCTCATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTATGCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGCATGACAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACTNCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTATCCGTGCATTTGTGTCGTTATCGAGGAGTACATTGC]




>consensus_472#1
TTTTTTTTTTTTTTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAACAT
ATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTTCT
GAGAGTGAGGTGCTAGATATTGGGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGGTG
CATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAAAAGCTTAAATGTGTTGGC
ATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTGGC
CTTACGCTTATTAAAGGGTGGGAGCACAGCAACCCTATATTTAGTGCTAGGCAGGCCTCA
TCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTATGC
CAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGCATGACA
GGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGA
GGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACT
NCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTAT
CCGTGCATTTGTGTCGTTATCGAGGAGTACATTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_472#0      CATCAAATAAATTTATAATCCCAGTTGAGTATACTAAACTAAACATAACCGGCACATGAA 60
consensus_472#1      ------------------------------------------------------------
                                                                                 

consensus_472#0      AATGTGGAAATAAATTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAAC 120
consensus_472#1      --TTTTTTTTTTTTTTTTATGAGAATAAAATTCTGTAGATAGGTAAAAAGCATTCCAAAC 58
                       * *     *   **********************************************

consensus_472#0      ATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTT 180
consensus_472#1      ATATAAACAAGCACACCTAAAACTATTGAAGATCACATGCCTCATCTATTCATCTTCCTT 118
                     ************************************************************

consensus_472#0      CTGAGAGTGAGGTGCTAGATATTGTGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGG 240
consensus_472#1      CTGAGAGTGAGGTGCTAGATATTGGGCCAAAACTTGTTGCTGATGAAGGATCTGTTATGG 178
                     ************************ ***********************************

consensus_472#0      TGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAGAAGCTTAAATGTGTTG 300
consensus_472#1      TGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAAAAGCTTAAATGTGTTG 238
                     ******************************************* ****************

consensus_472#0      GCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTG 360
consensus_472#1      GCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTTGCCTCATATTTG 298
                     ************************************************************

consensus_472#0      GCCTTACACTTATTAAAGGGTGGGAGCACAGCACCCCTATATTTAGTGCTAGGCAGGCCT 420
consensus_472#1      GCCTTACGCTTATTAAAGGGTGGGAGCACAGCAACCCTATATTTAGTGCTAGGCAGGCCT 358
                     ******* ************************* **************************

consensus_472#0      CATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTAT 480
consensus_472#1      CATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCTTTAT 418
                     ************************************************************

consensus_472#0      GCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGAATGA 540
consensus_472#1      GCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGCATGA 478
                     ******************************************************* ****

consensus_472#0      CAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAA 600
consensus_472#1      CAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAA 538
                     ************************************************************

consensus_472#0      GAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCA 660
consensus_472#1      GAGGGGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCA 598
                     ************************************************************

consensus_472#0      CTC-GTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCT 719
consensus_472#1      CTNCGTGTGGTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCT 658
                     **  ********************************************************

consensus_472#0      ATCCGTGCATTTGT----------------------- 733
consensus_472#1      ATCCGTGCATTTGTGTCGTTATCGAGGAGTACATTGC 695
                     **************