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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1256 fasta sequence
[TTCGCCGTCAGCTCAGGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAGATATCGGCATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCAGCCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCCACCGTCTCCGTGGCGAA-GCCGTCGTACCCCACGGTGACCACGCCCATGTCCGCCTCCACCTCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCAGGCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCAGAGCGCGAGCCCGACGGCGCTGCAGGTCGCGCTGGACTACGCCTGCGGCTACGGCGCGGACTGCTCGGCGATCCAGCCCGGCGGGAGCTGCTTCAACCCGGACACCGTCCACGACCACGCCTCCTACGCCTTCAACAGCTACTACCAGAAGAACCCCGTCGCCACCAGCTGCGACTTCGGCGGCACGGCCACCATCACCAACACCGATCCGAGTTCAGGGTCGTGCCAGTATTCAGCCTCGAGCGGTGGTGGTCAGAACATGCTGCCCCCGCCGTCCCCGACCACCCTGCCGCCGCCAACCCCGATGACGCCGACCACCCCGATGACACCAACACCGACCACGCCGGACACCGGGACGCCGATCTACGGTGGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAACTCCCCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCGGCGGTGGCGCTCGCCGGCGTCCTGATCGCGACGGTGTCTCTGATGAGCATGTCAACATGATCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTGCAGTTCAAGAATTAGTTGAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTCGCGACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTATAGCTCGGCAAAAGGCTGAGGTGCCCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAGCACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCAGGATATGTTTATATTACAGTTACAGATTCCACTGTTGTACTTAGAAAACCTATTAAAAGAATTTATTTC]
[+] EMBL AK063308 [TTCGCCGTCAGCTCAGGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAGATATCGGCATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCAGCCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCCACCGTCTCCGTGGCGAA GCCGTCGTACCCCACGGTGACCACGCCCATGTCCGCCTCCACCTCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCAGGCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCAGAGCGCGAGCCCGACGGCGCTGCAGGTCGCGCTGGACTACGCCTGCGGCTACGGCGCGGACTGCTCGGCGATCCAGCCCGGCGGGAGCTGCTTCAACCCGGACACCGTCCACGACCACGCCTCCTACGCCTTCAACAGCTACTACCAGAAGAACCCCGTCGCCACCAGCTGCGACTTCGGCGGCACGGCCACCATCACCAACACCGATCCGAGTTCAGGGTCGTGCCAGTATTCAGCCTCGAGCGGTGGTGGTCAGAACATGCTGCCCCCGCCGTCCCCGACCACCCTGCCGCCGCCAACCCCGATGACGCCGACCACCCCGATGACACCAACACCGACCACGCCGGACACCGGGACGCCGATCTACGGTGGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAACTCCCCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCGGCGGTGGCGCTCGCCGGCGTCCTGATCGCGACGGTGTCTCTGATGAGCATGTCAACATGATCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTGCAGTTCAAGAATTAGTTGAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTCGCGACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTATAGCTCGGCAAAAGGCTGAGGTGCCCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAGCACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCAGGATATGTTTATATTACAGTTACAGATTCCACTGTTGTACTTAGAAAACCTATTAAAAGAATTTATTTC]
[+] EMBL AU164151 [ GGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAGATATCGGCATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCA NCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCCACCGTCTCCGTGGCGAANGTC CGTACCCCACGGTGACCACGCCCATGTCCGNCTCCACCTCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCA GCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCANAGCGCGAG CCGACGGCGCT ]
consensusID : consensus_4726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[TCTATGGAATAATTTTAGTATGTCTTGGTATTTGAACAAAATGATAAACAGGAATGTTTTGCGTGGATTTCTTTCACATGAAAATTTGTGGCTTGACATGTAAAAGCATCCCATACATATATGGTTTTTTTTTTCCAACCTTACCAATTTCGCTTGATCGCGACAGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCANCCNGTGGCGCGAGCGCGCGCAGGGGCCTGGNCACCGTCTCCGTGGCGAACGGTTCGTACCCCAC]
[+] EMBL D43576 [TCTATGGAATAATTTTAGTATGTCTTGGTATTTGAACAAAATGATAAACAGGAATGTTTTGCGTGGATTTCTTTCACATGAAAATTTGTGGCTTGACATGTAAAAGCATCCCATACATATATGGTTTTTTTTTTCCAACCTTACCAATTTCGCTTGATCGCGACAGGAGCAGAGCACCACGGAGCAGAAGCAGCCGGTGATGCGTCANCCNGTGGCGCGAGCGCGCGCAGGGGCCTGGNCACCGTCTCCGTGGCGAACGGTTCGTACCCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4726#0 --------------------------------------------------TTCGCCGTCA 10
consensus_4726#1 TCTATGGAATAATTTTAGTATGTCTTGGTATTTGAACAAAATGATAAACAGGAATGTTTT 60
*
consensus_4726#0 GCTCAGGTCAGATCGTCAGGCCGTTCTGCTGCCTTGTTTGGAATAG------ATATCGGC 64
consensus_4726#1 GCGTGGATTTCTTTCACATGAAAATTTGTGGCTTGACATGTAAAAGCATCCCATACATAT 120
** * * * ** * * ** ** * ** ** ** ***
consensus_4726#0 ATGGCTTACTTGGGCCTCCTTGTTCTTCTTCTCGCCTTCTGCGGTGGAGCAGAGCACCAC 124
consensus_4726#1 ATGGTTTTTTTTTTCCAACCTTACCAATTTCGCTTGATCGCGACAGGAGCAGAGCACCAC 180
**** ** ** ** * * * *** * ** ***************
consensus_4726#0 GGAGCAGAAGCAGCCGGTGATGCGTCAGCCCGTGGCGCGAGCGCGCGCAGGGGCCTGGCC 184
consensus_4726#1 GGAGCAGAAGCAGCCGGTGATGCGTCANCCNGTGGCGCGAGCGCGCGCAGGGGCCTGGNC 240
*************************** ** *************************** *
consensus_4726#0 ACCGTCTCCGTGGCGAAGCCGTCGTACCCCACGGTGACCACGCCCATGTCCGCCTCCACC 244
consensus_4726#1 ACCGTCTCCGTGGCGAACGGTTCGTACCCCAC---------------------------- 272
***************** ***********
consensus_4726#0 TCCCCGAGCACGATGCCGATGAGCAGCTCGCCCTCCGCGTTCCCATCCCTGGCGACCGCA 304
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 GGCGGCGGCGGCGGTGGCGGCGGTGGAGGATCGTGGTGCGTGGCGAGCCAGAGCGCGAGC 364
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 CCGACGGCGCTGCAGGTCGCGCTGGACTACGCCTGCGGCTACGGCGCGGACTGCTCGGCG 424
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 ATCCAGCCCGGCGGGAGCTGCTTCAACCCGGACACCGTCCACGACCACGCCTCCTACGCC 484
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 TTCAACAGCTACTACCAGAAGAACCCCGTCGCCACCAGCTGCGACTTCGGCGGCACGGCC 544
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 ACCATCACCAACACCGATCCGAGTTCAGGGTCGTGCCAGTATTCAGCCTCGAGCGGTGGT 604
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 GGTCAGAACATGCTGCCCCCGCCGTCCCCGACCACCCTGCCGCCGCCAACCCCGATGACG 664
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 CCGACCACCCCGATGACACCAACACCGACCACGCCGGACACCGGGACGCCGATCTACGGT 724
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 GGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAAC 784
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 TCCCCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCG 844
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 GCGGTGGCGCTCGCCGGCGTCCTGATCGCGACGGTGTCTCTGATGAGCATGTCAACATGA 904
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 TCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTGCAGTTCAAGAATTAGTT 964
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 GAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTC 1024
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 GCGACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTAT 1084
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 AGCTCGGCAAAAGGCTGAGGTGCCCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAG 1144
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 CACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCAGGATATGTTTATATTAC 1204
consensus_4726#1 ------------------------------------------------------------
consensus_4726#0 AGTTACAGATTCCACTGTTGTACTTAGAAAACCTATTAAAAGAATTTATTTC 1256
consensus_4726#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||