These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 512 fasta sequence [GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGATGACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAACAAAAAAAAAA] [+] EMBL AU082707 [GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAA ] [+] EMBL CA757411 [ GCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAACGTGCTAAAGTCTGTATTGATGACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAACAAAAAAAAAA] consensusID : consensus_4734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT] [-] EMBL CA758226 [ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4734#0 GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTT 60 consensus_4734#1 ------------------------------------------------------------ consensus_4734#0 CGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTA 120 consensus_4734#1 ------ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTA 54 ** **** ******** ********* *************************** consensus_4734#0 ATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGAT 180 consensus_4734#1 ATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGAT 114 *********** ***** ******************************* **** ***** consensus_4734#0 ATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCC 240 consensus_4734#1 ATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCC 174 ********************** ***** ** *** ********* ************* consensus_4734#0 TAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTAT 300 consensus_4734#1 TAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTAT 234 **************************** ******************** ********** consensus_4734#0 GTCTAGCAAGAAATAAAGGG-CTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGAT 359 consensus_4734#1 GTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAA---AAAAAAAA 291 ********* ********** ** * ** ******* ****** *** * * consensus_4734#0 GACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAAT 419 consensus_4734#1 AAAAAAAAAAAAAAAAAAAAAAAAAAACT------------------------------- 320 * ** * * consensus_4734#0 ATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 479 consensus_4734#1 ------------------------------------------------------------ consensus_4734#0 AAAAAAAAAAAAANNANAAAAACAAAAAAAAAA 512 consensus_4734#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||