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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4734 cluster # 4734       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4734#0 length = 512 sequences # 2  
consensus_4734#1 length = 320 sequences # 1  

consensusID : consensus_4734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 512
fasta sequence
                              [GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGATGACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAACAAAAAAAAAA]

[+] EMBL AU082707             [GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAA                                                                                                                                                                          ]
[+] EMBL CA757411             [                                                                                            GCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAACGTGCTAAAGTCTGTATTGATGACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNANAAAAACAAAAAAAAAA]


>consensus_4734#0 GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTT CGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTA ATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGAT ATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCC TAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTAT GTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGATG ACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAATA TGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAANNANAAAAACAAAAAAAAAA



consensusID : consensus_4734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence
                              [ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT]

[-] EMBL CA758226             [ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT]


>consensus_4734#1 ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTAATGGTA AAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGATATGGTG ATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCCTAATGT GTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTATGTCTAG CAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4734#0      GGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTCTGGCTCTAGTT 60
consensus_4734#1      ------------------------------------------------------------
                                                                                  

consensus_4734#0      CGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTA 120
consensus_4734#1      ------ACCCATATTATGGTGGCCCGAGTTACCCGAATGCTGATGCTAATGGTAATGGTA 54
                            ** **** ******** ********* ***************************

consensus_4734#0      ATGGTAAAGGCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACCGGTTCTGGAT 180
consensus_4734#1      ATGGTAAAGGCCCCGGTCCATATGGTGGGAGCGGTGGTGGCCAAGGTACTGGTTTTGGAT 114
                      *********** ***** ******************************* **** *****

consensus_4734#0      ATGGTGATGCCAGCCCATAATTCTCCTCACCATCCAACCAAAATACACTTGAATAGAGCC 240
consensus_4734#1      ATGGTGATGCCAGCCCATAATTTTCCTCCCCCTCCCCCCAAAATACCCTTGAATAGAGCC 174
                      ********************** ***** ** ***  ********* *************

consensus_4734#0      TAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTGTACTCTTTTAT 300
consensus_4734#1      TAATGTGTAATATTGTATTTTGAAGTTAAAGTATTTTTTTCTTTATTTGGACTCTTTTAT 234
                      **************************** ******************** **********

consensus_4734#0      GTCTAGCAAGAAATAAAGGG-CTCTATTATTTTGGTAAAAAAACTAAAGTCTGTATTGAT 359
consensus_4734#1      GTCTAGCAAAAAATAAAGGGGCTTTTTTTTTTTGGTTAAAAAAAAAAAA---AAAAAAAA 291
                      ********* ********** ** * ** ******* ******  ***      *   * 

consensus_4734#0      GACTTGTGTGGGTGGGCGTGGTTAAGATTGTGTTATTGTTCTCAGCATTCATCAGTGAAT 419
consensus_4734#1      AAAAAAAAAAAAAAAAAAAAAAAAAAACT------------------------------- 320
                       *                     ** * *                               

consensus_4734#0      ATGAATGGACATTTCTCCACCCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 479
consensus_4734#1      ------------------------------------------------------------
                                                                                  

consensus_4734#0      AAAAAAAAAAAAANNANAAAAACAAAAAAAAAA 512
consensus_4734#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)