These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGCCGGCCGTGATGGGAAACTCTTCTGATCGATCGATCCACTCGCCGTATATGCCGCCACTGCAAATAAGGAGCTTAATTATTTAATATCTACTTAATTATGTGATATATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTTTATAGATGGCGGTGCATGTATTAATTATTTGTCCTACTTAGGACGACGTGATGATGATTATTTATGGACTAAA] [+] EMBL AK071647 [CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGCCGGCCGTGATGGGAAACTCTTCTGATCGATCGATCCACTCGCCGTATATGCCGCCACTGCAAATAAGGAGCTTAATTATTTAATATCTACTTAATTATGTGATATATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTTTATAGATGGCGGTGCATGTATTAATTATTTGTCCTACTTAGGACGACGTGATGATGATTATTTATGGACTAAA] consensusID : consensus_4740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGNATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCTCGGCCGGCTCGCCGCCGTCAACTGCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATCGACCCACTCTGCCCGTTTTTCCCGCTCCCTGTATATCCAACGCGCTTCAAATATTCAAACAATCTACTTCAATCATCGCGCATTTCCAGCCCACGCCCTCATTGACCCATGTCTACACTGTCTATCGCACTTCTTCG] [+] EMBL CA756506 [CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGNATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCTCGGCCGGCTCGCCGCCGTCAACTGCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATCGACCCACTCTGCCCGTTTTTCCCGCTCCCTGTATATCCAACGCGCTTCAAATATTCAAACAATCTACTTCAATCATCGCGCATTTCCAGCCCACGCCCTCATTGACCCATGTCTACACTGTCTATCGCACTTCTTCG] consensusID : consensus_4740#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [GCCGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGCCAGCTGCAAATAAGGAGCCTTAATTAGTTTAATATTCATACCTTAACTTATTGTGAATATAATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTCTTATAGATGGCGGTGCATGTATAATTATTTGTCCTACTTAGGAGCGACGTG] [+] EMBL BI808645 [GCCGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGCCAGCTGCAAATAAGGAGCCTTAATTAGTTTAATATTCATACCTTAACTTATTGTGAATATAATAGCCATGTTATCATGATCCAGGTAGAACTGATGATGAACTCTTATAGATGGCGGTGCATGTATAATTATTTGTCCTACTTAGGAGCGACGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4740#0 CAAAGCAAGCCAAGAAAAAACAAGAAGCAAAAAAATCCCAAAGCAATCTAGCTAGCTAAA 60 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 TAACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTAGCTTAGCTTAGAGAGCAAATTAA 120 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 ------------------------------------------------------------ consensus_4740#0 GATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAGGGAGGAGCAGGAGGAGGAGGCAG 180 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 ---------------------CAGGAATTCGGCACGAGTAAAAAACAGAGCAAAAAAATC 39 consensus_4740#0 TACTGCTGCTCCGGCCACGGCCGCCGCCGCCGGCGGCATCGGCGGCGGCGGTGCCGGCGA 240 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 CCAAAGCAATCTAGCTAGCTAAATGACATTAGTTTAGTGCAAGTGCAAGAACAGCTAGTA 99 consensus_4740#0 GGTGGCGGTGCAGAAGGTGTACCACAACCTGGCACCCAAGCCGACCTTCAGGAAGATCGA 300 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 GCTTAGCTTAGAGAGCAAATTAAGATGAGCTGGTGGCAGAGCCAGAAGATCATCCGCAAG 159 consensus_4740#0 CAGCATCAAAGAGGACATCAACAAGAAGGCTGACAGGTTCATCAAGATGACCAGGGCAAG 360 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 GGAGGAGCAGGAGGAGGAGGCAGTACTGCTGCTCCGGCCACCGCCGCCGCCGNCGGCGGN 219 consensus_4740#0 GTTGTTCAACCAGACCAAGTCCTTCCGGCAGCCGGCCGGCTCGCCGCCGGCGACGGCGGC 420 consensus_4740#2 ----------------------------------------------------------GC 2 consensus_4740#1 ATCGGCGGCGGCGGTGCCGGCGAGGTGGCGGTGCANAAGGTGTACCACAACCTGGCACCC 279 * consensus_4740#0 CGGCCG-TGATGGGAAACTC-TTCTGA-TCGATCGATCCA-CTCGCCGTATATGCCGCCA 476 consensus_4740#2 CGGCCGATGATGGGAAACTCATTCTGAATCGATCGATCCATCTCGCCGTATATGCCGCCA 62 consensus_4740#1 AAGCCGACCTTCAGGAAGATCGACAGCATCAAAGAGGACA--TCAACAAGAAGGCTGACA 337 **** * * ** * * ** * ** ** * * ** * ** consensus_4740#0 -CTGCAAATAAGGAGC-TTAATTA---TTTAATATCTA---CTTAATTA--TGTG-A-TA 524 consensus_4740#2 GCTGCAAATAAGGAGCCTTAATTAG--TTTAATATTCATACCTTAACTTATTGTG-AATA 119 consensus_4740#1 GGTTCATCAAAGATGACCAGGGCAAGGTTGTTCAACCAGACCAAGTCCTTTCCCGCAGCT 397 * ** *** * * ** * * * * * consensus_4740#0 TA-TAGCCATGTTATCATGATC--CAGGTAGAACTGATGATGAACT-TTATAGATGGCGG 580 consensus_4740#2 TAATAGCCATGTTATCATGATC--CAGGTAGAACTGATGATGAACTCTTATAGATGGCGG 177 consensus_4740#1 CGGCCGGCTCGCCGCCGTCAACTGCGGCCGGCCTCGATGGGAAACTTTTCTGATCTGATC 457 * * * * * * * * * * **** **** ** * * consensus_4740#0 TGCATGTATTAATTATTTGTCCTACT-----TAGGA-CGACGTGATGATGATTATTTATG 634 consensus_4740#2 TGCATGTAT-AATTATTTGTCCTACT-----TAGGAGCGACGTG---------------- 215 consensus_4740#1 GACCCACTCTGCCCGTTTTTCCCGCTCCCTGTATATCCAACGCGCTTCAAATATTCAAAC 517 * *** *** ** ** * *** * consensus_4740#0 GACTAAA----------------------------------------------------- 641 consensus_4740#2 ------------------------------------------------------------ consensus_4740#1 AATCTACTTCAATCATCGCGCATTTCCAGCCCACGCCCTCATTGACCCATGTCTACACTG 577 consensus_4740#0 ----------------- consensus_4740#2 ----------------- consensus_4740#1 TCTATCGCACTTCTTCG 594 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||