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Oryza sativa
cluster # 4744 cluster # 4744       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4744#0 length = 798 sequences # 3  

consensusID : consensus_4744#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 798
fasta sequence
                              [CGCTTCAAAAGCCTTTTTAGCCACCTCGTAGCCTCTCACAAGTACTACATTTTCATCTCGAAAGAAAGTGAAATCATCAAGAACTTGGTGAGAATCGATCAAAGAGCAGTGCCAGCTGCAGCTGCAGCA-G-AGGATCGGAGGAGGAAGGGGGAGAAGAGGAGATCGGGGAGTGGAGAGACGAAAAGCAGCAGCAGTAGTTGCAGCAGCAGCAGCATGGAGGAGAGAGTGAAGATTGGAGGAGACGGCGAAGAAGAAGAAGAAGAAGAAGCAGAGGAGGAGGAGGCGCCATTGGAGGTGGTGAGGGCAGCGAAAAGGAGATTTGGGGTGGTGGTGGTGGTGGGCCCACCCCCCAGCTGAGGAGGAGCAGGAGAAGGAAGAAGAGCGAGGAGGAGAGGATCCCCTCTCACGTCAAAGGAGGGGGAAAGCAGCATAAAGGCAGCAGCAGCTACTGGAGGA-GAAGAGGAAGCAAGAGAGC-TCAGCTTCACTACTTCACT-GGCTCGGCCAACCAAAGCAGCAGTCGAAAGCGAGAAAAAAAGCTTAAGAAAGAAAGAAAGCTAGCTTCAGTGAGAGTGAGAATGTGGGGGGAGATAGAGAGAGAGAGAGAGAGAGAGAGTCTAGTGTGTCTTGAGAGAGATATATAACACCAACAACTCCCAGCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATCTGGTTCTTGTACCACCACCACCACTGCCCCCTTTGCATTGTCCCTCCCTGGCCACTTCTTTCTCCTTCTCCATTTTGTGCCTAGCGTACA]

[+] EMBL AK102637             [CGCTTCAAAAGCCTTTTTAGCCACCTCGTAGCCTCTCACAAGTACTACATTTTCATCTCGAAAGAAAGTGAAATCATCAAGAACTTGGTGAGAATCGATCAAAGAGCAGTGCCAGCTGCAGCTGCAGCA G AGGATCGGAGGAGGAAGGGGGAGAAGAGGAGATCGGGGAGTGGAGAGACGAAAAGCAGCAGCAGTAGTTGCAGCAGCAGCAGCATGGAGGAGAGAGTGAAGATTGGAGGAGACGGCGAAGAAGAAGAAGAAGAAGAAGCAGAGGAGGAGGAGGCGCCATTGGAGGTGGTGAGGGCAGCGAAAAGGAGATTTGGGGTGGTGGTGGTGGTGGGCCCACCCCCCAGCTGAGGAGGAGCAGGAGAAGGAAGAAGAGCGAGGAGGAGAGGATCCCCTCTCACGTCAAAGGAGGGGGAAAGCAGCATAAAGGCAGCAGCAGCTACTGGAGGA GAAGAGGAAGCAAGAGAGC TCAGCTTCACTACTTCACT GGCTCGGCCAACCAAAGCAGCAGTCGAAAGCGAGAAAAAAAGCTTAAGAAAGAAAGAAAGCTAGCTTCAGTGAGAGTGAGAATGTGGGGGGAGATAGAGAGAGAGAGAGAGAGAGAGAGTCTAGTGTGTCTTGAGAGAGATATATAACACCAACAACTCCCAGCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATCTGGTTCTTGTACCACCACCACCACTGCCCCCTTTGCATTGTCCCTCCCTGGCCACTTCTTTCTCCTTCTCCATTTTGTGCCTAGCGTACA]
[+] EMBL OS1321666            [           CCTTTTTAGCCACCTCGTAGCCTCTCACAAGTACTACATTTTCATCTCGAAAGAAAGTGAAATCATCAAGAACTTGGTGAGAATCGATCAAAGAGCAGTGCCAGCTGCAGCTGCA NA GAAGGATCGCAGGAGGAAGGGGGAGAAGAGGAGATCGGGGAGTGGAGAGACGAAAAGCAGCAGCAGTAGTTGCAGCAGCAGCAGCATGGAGGAGAGAGTGAAGATTGGAGGAGACGGCGAAGAAGAAGAAGAAGAAGAAGCAGAGGAGGAGGAGGCGCCATTGGAGGTGGTGAGGNCAGCGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C26462               [                                                                      AAATCATCAAGAACTTGGTGAGAATCGATCAAAGAGCAGTGCCAGCTGCAGCTGCAGCANG AGGATCGGAGGAGGAAGGGGGAGAAGAGGAGATCGGGGAGTGGAGAGACGAAAAGCAGCAGCAGTAGTTGCAGCAGCAGCAGCATGGAGGAGAGAGTNAAGATTGGAGGAGACGGCGAAGAAGAAGAAGAAGAAGAAGCAGAGGAGGAGGAGGCGCCATTGGAGGTGGTGAGGGCAGCGAAAAGGAGATTTGGGGTGGTGGTGGTGGTGGGCCCACCCCCCAGCTGAGGAGGAGCAGGAGAAGGAAGAAGAGCGAAGAGGAGAGGATCTCCTCTCACGTCAAAGGAGGGGG AAGCAGCATAAAGGCAGCAGCAGCTACTNGAGGAGGAAGAGGAAGCAAGATAGCTTCANTTTCACTACTTCACTNGGTTCGGCCAACCc                                                                                                                                                                                                                                                                                                  ]


>consensus_4744#0 CGCTTCAAAAGCCTTTTTAGCCACCTCGTAGCCTCTCACAAGTACTACATTTTCATCTCG AAAGAAAGTGAAATCATCAAGAACTTGGTGAGAATCGATCAAAGAGCAGTGCCAGCTGCA GCTGCAGCAGAGGATCGGAGGAGGAAGGGGGAGAAGAGGAGATCGGGGAGTGGAGAGACG AAAAGCAGCAGCAGTAGTTGCAGCAGCAGCAGCATGGAGGAGAGAGTGAAGATTGGAGGA GACGGCGAAGAAGAAGAAGAAGAAGAAGCAGAGGAGGAGGAGGCGCCATTGGAGGTGGTG AGGGCAGCGAAAAGGAGATTTGGGGTGGTGGTGGTGGTGGGCCCACCCCCCAGCTGAGGA GGAGCAGGAGAAGGAAGAAGAGCGAGGAGGAGAGGATCCCCTCTCACGTCAAAGGAGGGG GAAAGCAGCATAAAGGCAGCAGCAGCTACTGGAGGAGAAGAGGAAGCAAGAGAGCTCAGC TTCACTACTTCACTGGCTCGGCCAACCAAAGCAGCAGTCGAAAGCGAGAAAAAAAGCTTA AGAAAGAAAGAAAGCTAGCTTCAGTGAGAGTGAGAATGTGGGGGGAGATAGAGAGAGAGA GAGAGAGAGAGAGTCTAGTGTGTCTTGAGAGAGATATATAACACCAACAACTCCCAGCTG TGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATCTGGTTCTTGTAC CACCACCACCACTGCCCCCTTTGCATTGTCCCTCCCTGGCCACTTCTTTCTCCTTCTCCA TTTTGTGCCTAGCGTACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)