These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1967 fasta sequence [GAGCTGAAGAGCCGGCTCGTTCCTCTCCTTCCCGTTCACATTTCAAAACCTCAAAGCCCCCACAAACTTCGGAATCGAGGTGAGCGGGAGTTCGGAGAGATCAACCCGAGGGCCGCCGGCCGATGGCGATAGATCAGCCCATCAAAAAGAGAGGGAGACCACCAGGTTCCAAGAACACGAAGAACAAGATGGAGCAGAAGATGGAACTAGTCCATCAAAGGCTCGCCTTACTTGACAGCAGCAGTGGCAGCGACAGGGATGACGATATTGGGCCGAGGGCTATAATAATTGATTGTGATGAAGATGATACGGATGACGTGATGGAGGTTGTTCCTTTGAAAATGCTGATGCCAAAGGAGGTGGAAAATGAGCAAAGAACGGTTCCTGGCATTCCTCAAACATGCAATACCCAGAACACTAGCAATGGACGCACTAACACCACTGAAGTGCCAGTTAAGGGCCAAAATAAATGTGCAAGTTATCTTCCAAAAAAATCTAGTGTTCAGGCGTTCTGTGGATCTGCTATGAAGAGAGCTCAAGAGATTCAAACGAAGTTACCAGCAGAGCATCCTAGCTTTGTTAAACATATGTTACATTCACATGTTGTCAGCGGATTTTGGCTGGGTCTACCAGCTGGCTTCTGCAACAAGTATCTCCCAAAGCATGACACTGACATTGTGCTCGAAGATGAGAATGGGAACAACCATAACACAAATTACCTGGGTGGTAAGCAGGGACTCAGTGCTGGATGGAGAGGTTTTGCGATTAACCATGATATCAAGGTTGGCGATGTTGTGGTCTTTGAGCTTGTGAGCACAACAAAATTCAAGGTGCATATAATTAGAGATAAAAACATCAGCCCAACTGACAGAGCACCCGGTCTCAAGAGTTTTTACGCCTGCAAGAAACGGAAGATATCTAAAGAAGCTACTGATAATGCCACCAAGCCTAAGGAGGATCCAGAGACTACTAGAGTCAGTAGCAAAGTGGCTCATGATGATACCCAGAATCTAGTTCATGAAGCAATAGACGGCATCAGGTTTTCAGACTCAGAGATGAGCTTTGACGACGTGATG-AGCTACAGTAACTTCAACATCGTCGTGGACGGCTTGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGACGTACTATGAGCTGTGCTGCGCCCAGAAGTCGTTCCTCCACAGGCATCTGCTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGCATCAGGGCCTGCGGGGCGGGTACCTCCTCGCAAGAGGACTTCCTGATCTGGAAGAAGACGCTGCAGTCATTCGACCTGCTGGGAATGAATGTTGCGTTCTTGCTCAAGCGCGTTGACGATATTCTCGGCCTCCCCGAGCAACCGAGGGATCCATCGGAGTGTAGCAAGTACAATGAGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATGTTGACAGTGAAGGATGTGCTGAAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGCGTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGCGCCATGGTGATCCTGCTTGACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGATGATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAAACTCAAGGACTGACCACATTTTTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTGCCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCAGGATGCTGTTTTTACACGGTAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGAAATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGT] [+] EMBL AK106332 [GAGCTGAAGAGCCGGCTCGTTCCTCTCCTTCCCGTTCACATTTCAAAACCTCAAAGCCCCCACAAACTTCGGAATCGAGGTGAGCGGGAGTTCGGAGAGATCAACCCGAGGGCCGCCGGCCGATGGCGATAGATCAGCCCATCAAAAAGAGAGGGAGACCACCAGGTTCCAAGAACACGAAGAACAAGATGGAGCAGAAGATGGAACTAGTCCATCAAAGGCTCGCCTTACTTGACAGCAGCAGTGGCAGCGACAGGGATGACGATATTGGGCCGAGGGCTATAATAATTGATTGTGATGAAGATGATACGGATGACGTGATGGAGGTTGTTCCTTTGAAAATGCTGATGCCAAAGGAGGTGGAAAATGAGCAAAGAACGGTTCCTGGCATTCCTCAAACATGCAATACCCAGAACACTAGCAATGGACGCACTAACACCACTGAAGTGCCAGTTAAGGGCCAAAATAAATGTGCAAGTTATCTTCCAAAAAAATCTAGTGTTCAGGCGTTCTGTGGATCTGCTATGAAGAGAGCTCAAGAGATTCAAACGAAGTTACCAGCAGAGCATCCTAGCTTTGTTAAACATATGTTACATTCACATGTTGTCAGCGGATTTTGGCTGGGTCTACCAGCTGGCTTCTGCAACAAGTATCTCCCAAAGCATGACACTGACATTGTGCTCGAAGATGAGAATGGGAACAACCATAACACAAATTACCTGGGTGGTAAGCAGGGACTCAGTGCTGGATGGAGAGGTTTTGCGATTAACCATGATATCAAGGTTGGCGATGTTGTGGTCTTTGAGCTTGTGAGCACAACAAAATTCAAGGTGCATATAATTAGAGATAAAAACATCAGCCCAACTGACAGAGCACCCGGTCTCAAGAGTTTTTACGCCTGCAAGAAACGGAAGATATCTAAAGAAGCTACTGATAATGCCACCAAGCCTAAGGAGGATCCAGAGACTACTAGAGTCAGTAGCAAAGTGGCTCATGATGATACCCAGAATCTAGTTCATGAAGCAATAGACGGCATCAGGTTTTCAGACTCAGAGATGAGCTTTGACGACGTGATG AGCTACAGTAACTTCAACATCGTCGTGGACGGCTTGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGACGTACTATGAGCTGTGCTGCGCCCAGAAGTCGTTCCTCCACAGGCATCTGCTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGCATCAGGGCCTGCGGGGCGGGTACCTCCTCGCAAGAGGACTTCCTGATCTGGAAGAAGACGCTGCAGTCATTCGACCTGCTGGGAATGAATGTTGCGTTCTTGCTCAAGCGCGTTGACGATATTCTCGGCCTCCCCGAGCAACCGAGGGATCCATCGGAGTGTAGCAAGTACAATGAGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATGTTGACAGTGAAGGATGTGCTGAAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGCGTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGCGCCATGGTGATCCTGCTTGACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGATGATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAAACTCAAGGACTGACCACATTTTTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTGCCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCAGGATGCTGTTTTTACACGGTAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGAAATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGT] [+] EMBL AA749981 [ TAGACGGCATCAGGTTTT AGACTCAGAGATGAGCTTTGACGACGTGATGAAGCTGCAGTAACTTCAACATCGTCGTGGACGGCAAGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGACGTACTATGAGCTGTGCTGC CCCAGAAGTCGTTCCTCCACAGGCATCTGCTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCACGGAGACG TCAA ] consensusID : consensus_4759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [GACGAACTTCTTGCTTCAATCAAGGATGCAGAAGGACTCCTCCATTTGAAACGCTCCATGCTACATAAATAAACAAGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGGCGTACTATGAGCTGTGTGCCCCCGGGTCTTCCTCCACAGGCAATCTGCTGAGGCGCTGAGCCTACGTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGC] [+] EMBL AA749980 [GACGAACTTCTTGCTTCAATCAAGGATGCAGAAGGACTCCTCCATTTGAAACGCTCCATGCTACATAAATAAACAAGGTCATTGACTGCAAGTTCCCCGATCACCAGCGCAGGGCGTACTATGAGCTGTGTGCCCCCGGGTCTTCCTCCACAGGCAATCTGCTGAGGCGCTGAGCCTACGTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCTGAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4759#0 GAGCTGAAGAGCCGGCTCGTTCCTCTCCTTCCCGTTCACATTTCAAAACCTCAAAGCCCC 60 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 CACAAACTTCGGAATCGAGGTGAGCGGGAGTTCGGAGAGATCAACCCGAGGGCCGCCGGC 120 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 CGATGGCGATAGATCAGCCCATCAAAAAGAGAGGGAGACCACCAGGTTCCAAGAACACGA 180 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AGAACAAGATGGAGCAGAAGATGGAACTAGTCCATCAAAGGCTCGCCTTACTTGACAGCA 240 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GCAGTGGCAGCGACAGGGATGACGATATTGGGCCGAGGGCTATAATAATTGATTGTGATG 300 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AAGATGATACGGATGACGTGATGGAGGTTGTTCCTTTGAAAATGCTGATGCCAAAGGAGG 360 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TGGAAAATGAGCAAAGAACGGTTCCTGGCATTCCTCAAACATGCAATACCCAGAACACTA 420 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GCAATGGACGCACTAACACCACTGAAGTGCCAGTTAAGGGCCAAAATAAATGTGCAAGTT 480 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 ATCTTCCAAAAAAATCTAGTGTTCAGGCGTTCTGTGGATCTGCTATGAAGAGAGCTCAAG 540 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AGATTCAAACGAAGTTACCAGCAGAGCATCCTAGCTTTGTTAAACATATGTTACATTCAC 600 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 ATGTTGTCAGCGGATTTTGGCTGGGTCTACCAGCTGGCTTCTGCAACAAGTATCTCCCAA 660 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AGCATGACACTGACATTGTGCTCGAAGATGAGAATGGGAACAACCATAACACAAATTACC 720 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TGGGTGGTAAGCAGGGACTCAGTGCTGGATGGAGAGGTTTTGCGATTAACCATGATATCA 780 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AGGTTGGCGATGTTGTGGTCTTTGAGCTTGTGAGCACAACAAAATTCAAGGTGCATATAA 840 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TTAGAGATAAAAACATCAGCCCAACTGACAGAGCACCCGGTCTCAAGAGTTTTTACGCCT 900 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GCAAGAAACGGAAGATATCTAAAGAAGCTACTGATAATGCCACCAAGCCTAAGGAGGATC 960 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 CAGAGACTACTAGAGTCAGTAGCAAAGTGGCTCATGATGATACCCAGAATCTAGTTCATG 1020 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AAGCAATAGACGGCATCAGGTTTTCAGACTCAGAGATGAGCTTTGACGACGTGATGAGCT 1080 consensus_4759#1 --------GACGAACTTCTTGCTTCAA--TCAAGGATGCAGAAGGACTCCTCCATTTGAA 50 **** * **** *** **** *** * ** * consensus_4759#0 ACAGTAACTTCAACATCGTCGTGGACGGCTTGGTCATTGACTGCAAGTTCCCCGATCACC 1140 consensus_4759#1 ACGCTCCATGCTACATAA--ATAAACAA---GGTCATTGACTGCAAGTTCCCCGATCACC 105 ** * * * **** * ** ***************************** consensus_4759#0 AGCGCAGGACGTACTATGAGCTGTGCTGCGCCCAGAAGTCGTTCCTCCACAGGCA-TCTG 1199 consensus_4759#1 AGCGCAGGGCGTACTATGAGCTGTG-TGCCCCCGG--GTC-TTCCTCCACAGGCAATCTG 161 ******** **************** *** *** * *** ************** **** consensus_4759#0 CTGAGGCAGCTGAGCCTCACGCTCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCT 1259 consensus_4759#1 CTGAGGC-GCTGAGCCT-ACG-TCGTCGTGGGGGTGATCATGGAGACGATCAACATCGCT 218 ******* ********* *** ************************************** consensus_4759#0 GAGGGCATCAGGGCCTGCGGGGCGGGTACCTCCTCGCAAGAGGACTTCCTGATCTGGAAG 1319 consensus_4759#1 GAGGGC------------------------------------------------------ 224 ****** consensus_4759#0 AAGACGCTGCAGTCATTCGACCTGCTGGGAATGAATGTTGCGTTCTTGCTCAAGCGCGTT 1379 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GACGATATTCTCGGCCTCCCCGAGCAACCGAGGGATCCATCGGAGTGTAGCAAGTACAAT 1439 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GAGCTGAAGCTTGAGCGGTCTCGTGCTGGGGAGAAGGTGGAGGCTCTGGAGTCCATGATG 1499 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TTGACAGTGAAGGATGTGCTGAAGAAGATCGATGCCGAGATGGAGGAGATGGAGTCGAGC 1559 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GTGAGGAACCATGACATTGCGCTGCGGAAGATCGCCACTGCGCCATGGTGATCCTGCTTG 1619 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 ACATCTGGGGTACTTGTCTGAAACATTTTGGGTTCGTCATTCAGGGTTTCAGATGATGAT 1679 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 GATGATGATGATGCACTGGGAAACCTTCGTGGTGAGTGACTGAGTGGTGAATCCTGCTAA 1739 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 ACTCAAGGACTGACCACATTTTTGTGTACATTTCTTCAGTTACTACCACGCAGCTCAGTG 1799 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 CCTATCTAGAACTGTTCAGCAGCAAACCTGTCTAGGAATCAGGATGCTGTTTTTACACGG 1859 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 TAAATCGTATAACAGAAGTTGTAAATTTTGGGGGGCGAATGCGCTGTAAGCAGTGCAGGA 1919 consensus_4759#1 ------------------------------------------------------------ consensus_4759#0 AATGCGAGGAAGAAATGCAGAACACTACTTAATTATTTCAGACTCCGT 1967 consensus_4759#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||