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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1088 fasta sequence
[AATCTTCCACATATACAGTCTCTGGATCAATTGATGGATCTTGAGAAGGGCAAGAAGCCATCAGAACAGGCTGCAGCCTGCAGGATTATGCAGGTCAAGGACAAGCTCATCACCCTGCAGCCTGTGGTGAGAGCTTGTGTGTTCTTGGCAACAGCAGTGGCAGCTGTGATCATGGGGCTGAACAAGCAATCCTACACAACAGTTGTTGCAATTGTGGGCACCAGGCCAGTCACACAGACCTTCACTGCAAAGTTCAAAGACACTCCTGCATTTGTGTTCTTTGTCATTGCCAATGCTATTGCCAGTGGTTATAACCTGATGGTGCTGGTGACGAGGCGCATTCTGCAACGAAGAGCGCAGAGTTTGTCTGTTCATCTTCTTGATATGGTGATCCTGACTTTGTTGGCCACCGGCTCTGCCACAGCGGCGTCGATGGCTCAGCTAGGGAAGAATGGTAACTTGCACGCACGCTGGAACCCGATATGCGACAAATTTGGTTCTTTCTGCAACCATGGAGGAATAGCACTCGTGTCATCGTTCATCGGTGTCGCGCTCATGCTGGCCCTGAATCTACTGTCAGCAGCAGCCAACTCACCCCGCTCTAATGTGACCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCATGACAAAATTAACAATGCACTGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGAACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTGTGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGTACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACACTATTAAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTCCTCTTTTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTCTGGTGAACCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTTTGTTTTATTGTCTGAGCAGTGA]
[+] EMBL AK073789 [AATCTTCCACATATACAGTCTCTGGATCAATTGATGGATCTTGAGAAGGGCAAGAAGCCATCAGAACAGGCTGCAGCCTGCAGGATTATGCAGGTCAAGGACAAGCTCATCACCCTGCAGCCTGTGGTGAGAGCTTGTGTGTTCTTGGCAACAGCAGTGGCAGCTGTGATCATGGGGCTGAACAAGCAATCCTACACAACAGTTGTTGCAATTGTGGGCACCAGGCCAGTCACACAGACCTTCACTGCAAAGTTCAAAGACACTCCTGCATTTGTGTTCTTTGTCATTGCCAATGCTATTGCCAGTGGTTATAACCTGATGGTGCTGGTGACGAGGCGCATTCTGCAACGAAGAGCGCAGAGTTTGTCTGTTCATCTTCTTGATATGGTGATCCTGACTTTGTTGGCCACCGGCTCTGCCACAGCGGCGTCGATGGCTCAGCTAGGGAAGAATGGTAACTTGCACGCACGCTGGAACCCGATATGCGACAAATTTGGTTCTTTCTGCAACCATGGAGGAATAGCACTCGTGTCATCGTTCATCGGTGTCGCGCTCATGCTGGCCCTGAATCTACTGTCAGCAGCAGCCAACTCACCCCGCTCTAATGTGACCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCATGACAAAATTAACAATGCACTGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGAACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTGTGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGTACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACACTATTAAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTCCTCTTTTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTCTGGTGAACCATGGGCTTTCCA ]
[+] EMBL AK063882 [ TGGAGGAATAGCACTCGTGTCATCGTTCATCGGTGTCGCGCTCATGCTGGCCCTGAATCTACTGTCAGCAGCAGCCAACTCACCCCGCTCTAATGTGACCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCATGACAAAATTAACAATGCACTGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGAACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTGTGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGTACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACACTATTAAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTCCTC TTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTCTGGTGAACCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTTTGTTTTATTGTCTGAGCAGTGA]
consensusID : consensus_4766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[AAATCACATTTTGCGCCCCAATTTGGGTTCTTTTCTCCACCCCATGGAGGAATAGCACTCCGTGTGATCGGTTATTGGGGTGCGCGGTCATGCTGGCCGTGATTTTCCGGTCCAGCAGCAGCCAACTCACCCCGCTTTAATTGTGCCCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCATGACAAAATTAACAATGCCCCGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGAACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTGTGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGTACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACCCTATTAAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTCCTCTTTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTCTGGTGACCCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTTTGTTTTATTGTCTGAGCAGTGAAGTTGTTTGGAGTTGCTTAAAAAAAAAA]
[-] EMBL CA761516 [AAATCACATTTTGCGCCCCAATTTGGGTTCTTTTCTCCACCCCATGGAGGAATAGCACTCCGTGTGATCGGTTATTGGGGTGCGCGGTCATGCTGGCCGTGATTTTCCGGTCCAGCAGCAGCCAACTCACCCCGCTTTAATTGTGCCCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCATGACAAAATTAACAATGCCCCGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGAACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTGTGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGTACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACCCTATTAAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTCCTCTTTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTCTGGTGACCCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTTTGTTTTATTGTCTGAGCAGTGAAGTTGTTTGGAGTTGCTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4766#0 AATCTTCCACATATACAGTCTCTGGATCAATTGATGGATCTTGAGAAGGGCAAGAAGCCA 60
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 TCAGAACAGGCTGCAGCCTGCAGGATTATGCAGGTCAAGGACAAGCTCATCACCCTGCAG 120
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 CCTGTGGTGAGAGCTTGTGTGTTCTTGGCAACAGCAGTGGCAGCTGTGATCATGGGGCTG 180
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 AACAAGCAATCCTACACAACAGTTGTTGCAATTGTGGGCACCAGGCCAGTCACACAGACC 240
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 TTCACTGCAAAGTTCAAAGACACTCCTGCATTTGTGTTCTTTGTCATTGCCAATGCTATT 300
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 GCCAGTGGTTATAACCTGATGGTGCTGGTGACGAGGCGCATTCTGCAACGAAGAGCGCAG 360
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 AGTTTGTCTGTTCATCTTCTTGATATGGTGATCCTGACTTTGTTGGCCACCGGCTCTGCC 420
consensus_4766#1 ------------------------------------------------------------
consensus_4766#0 ACAGCGGCGTCGATGGCTCAGCTAGGGAAGAATGGTAACTTGCACGCACGCTGGAACCCG 480
consensus_4766#1 ----------------------------------------------------AAATCACA 8
* * *
consensus_4766#0 ATATGCGAC--AAATTTGGTTCTTTCTGCAACC--ATGGAGGAATAGCACTC-GTGTCAT 535
consensus_4766#1 TTTTGCGCCCCAATTTGGGTTCTTTTCTCCACCCCATGGAGGAATAGCACTCCGTGTGAT 68
* **** * ** ** ******** * *** ***************** **** **
consensus_4766#0 CGTTCATCGGTGT-CGCGCTCATGCTGGCCCTGAATCTACTGTC-AGCAGCAGCCAACTC 593
consensus_4766#1 CGGTTATTGGGGTGCGCGGTCATGCTGGCCGTGATTTTCCGGTCCAGCAGCAGCCAACTC 128
** * ** ** ** **** *********** *** * * * *** ***************
consensus_4766#0 ACCCCGCTCTAAT-GTGACCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCA 652
consensus_4766#1 ACCCCGCTTTAATTGTGCCCGGCCAATGAGTTGTCCATATCTCTCAGGACAGCTCATTCA 188
******** **** *** ******************************************
consensus_4766#0 TGACAAAATTAACAATGCACTGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGA 712
consensus_4766#1 TGACAAAATTAACAATGCCCCGTTTCTGTCTTTGGATTGTACTCAGGTTAGGGCAGAAGA 248
****************** * ***************************************
consensus_4766#0 ACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTG 772
consensus_4766#1 ACTGTAAGTCTATTATCTGCTCCATGTGGGAGCTGGATCACAACCTTCAGTGAGCCAGTG 308
************************************************************
consensus_4766#0 TGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGT 832
consensus_4766#1 TGCTAAATTTGGCATGCAACTGTTCCATCTTGCTTGGCCTGAAATGAGCAGGCCAAGAGT 368
************************************************************
consensus_4766#0 ACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACACTATT 892
consensus_4766#1 ACAAACACATAAACTCCAATTGGTTATGGGGCTTTAGCTAGATCAAGTTGTTACCCTATT 428
****************************************************** *****
consensus_4766#0 AAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTC 952
consensus_4766#1 AAATTCTACTACTTTGTGGGTGTAAATTTTATCTTGTACTAATAGTCCTGCCAATTTGTC 488
************************************************************
consensus_4766#0 CTCTTTTTTTTTTTTTTTTGCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTC 1012
consensus_4766#1 CTCTTTTTTTTTTTTTTT-GCTTAGGTGGATGCAACTTTTCATTATTTAACAGGCTTGTC 547
****************** *****************************************
consensus_4766#0 TGGTGAACCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTTTGTTTT 1072
consensus_4766#1 TGGTGACCCATGGGCTTTCCAGACAATTAGTACCTGTTGTACTGCATTGAGCTTTGTTTT 607
****** *****************************************************
consensus_4766#0 ATTGTCTGAGCAGTGA---------------------------- 1088
consensus_4766#1 ATTGTCTGAGCAGTGAAGTTGTTTGGAGTTGCTTAAAAAAAAAA 651
****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||