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Oryza sativa
cluster # 4768 cluster # 4768       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4768#0 length = 1733 sequences # 3  

consensusID : consensus_4768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1733
fasta sequence
                              [AATCCACCACCTCTTTGCCATGGCCTCTCTTGCTCTGGTTTTCCTTGCCCTCTTGTTGCCTACCATCTCATGGCTATGGGACTACATCATTGTGCCCCATATATGGAGGCCTTACATTGCAGCCAAGAGGCTCAGGGAGCAAGGAATCCGTGGACTACCCTACAAGTTCTTGAAAGGCTGCAATGAGGATGTGAAGAAAATGAAGGATGCTGCAGATGATCTGGTTCTTGATGTTCATGACCACAATTACCTCCCAAGGGTTATGCCATAGTACCTGAAATGGAGATCTCAATATGGAGAGCCCTTTGTATACTGGTTTGGGGCAAAGCCTCGAATCTGCATCTTCAACTATGAGTGGGCCAGGCAGATTCTTTCAAGCAAGTCAGGACACTTTCTGAAGAATGACACTACCCCAACAGTGTT-GGCGTTGCTTGGCAA-GGGACTAGTACTGGTCGAAGGAATTGATTGGGAGCGCCATCGCAGAGTAATCAACCCTGCTTTCACCAT-GGATAAGATAAAGATGATGACAAAAACAATGGTAGCTTGTGCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGGAGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCATACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGAAAGAGCTCCAGGAAATTGCTGTAAAATCTCTCCTCAAC-GTGCAGATACCAGGATTCAGTTCAGCTACCTTCCTACAAAAGGGAATTGGAGGAAATTGACACTTGAAAAGAAGCTTAGGGGCACTCTCATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTTGGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGCTTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACCACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCAAGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTTAGCAAACTGAAAGAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCTCTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAAGACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGACGATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTTCCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCGATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCCCCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCTGTTGTTCTAAGGCTACTGGATGCATGAAGTTAGATGATTTACATGTTACCAAACTTAAATGGAATCTGTATGCCAAAGGTTGCTACTGACCTACGGCACTATACATTGTACCCCACAGTGGATGTATCCTTATAAAATAAAATAGCTCGGGCCATGATTCAATGTGAATTACT]

[+] EMBL AK069394             [AATCCACCACCTCTTTGCCATGGCCTCTCTTGCTCTGGTTTTCCTTGCCCTCTTGTTGCCTACCATCTCATGGCTATGGGACTACATCATTGTGCCCCATATATGGAGGCCTTACATTGCAGCCAAGAGGCTCAGGGAGCAAGGAATCCGTGGACTACCCTACAAGTTCTTGAAAGGCTGCAATGAGGATGTGAAGAAAATGAAGGATGCTGCAGATGATCTGGTTCTTGATGTTCATGACCACAATTACCTCCCAAGGGTTATGCCATAGTACCTGAAATGGAGATCTCAATATGGAGAGCCCTTTGTATACTGGTTTGGGGCAAAGCCTCGAATCTGCATCTTCAACTATGAGTGGGCCAGGCAGATTCTTTCAAGCAAGTCAGGACACTTTCTGAAGAATGACACTACCCCAACAGTGTT GGCGTTGCTTGGCAA GGGACTAGTACTGGTCGAAGGAATTGATTGGGAGCGCCATCGCAGAGTAATCAACCCTGCTTTCACCAT GGATAAGATAAAGATGATGACAAAAACAATGGTAGCTTGTGCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGGAGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCATACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGAAAGAGCTCCAGGAAATTGCTGTAAAATCTCTCCTCAAC GTGCAGATACCAGGATTCAGTTCAGCTACCTTCCTACAAAAGGGAATTGGAGGAAATTGACACTTGAAAAGAAGCTTAGGGGCACTCTCATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTTGGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGCTTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACCACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCAAGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTTAGCAAACTGAAAGAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCTCTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAAGACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGACGATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTTCCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCGATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCCCCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCTGTTGTTCTAAGGCTACTGGATGCATGAAGTTAGATGATTTACATGTTACCAAACTTAAATGGAATCTGTATGCCAAAGGTTGCTACTGACCTACGGCACTATACATTGTACCCCACAGTGGATGTATCCTTATAAAATAAAATAGCTCGGGCCATGATTCAATGTGAATTACT]
[+] EMBL C26232               [                                                                                      TCATTGTGCCCCATATATGGAGGCCTTACATTGCAGCCAAGAGG TCAGGGA NAAGGAATCCGTGGACCACCCTACAAGTTCTTGAAAGGCTGCAATGAGGATGTGAAGAAAATGAAGGATGCTGCAGATGATCTGGTTCTTGATGTTCATGACCACAATTACCTCCCAAGGGTTATGCCATAGTACCTGAAATGGAGATCTCAATATGGAGAGCCCTTTGTATACTGGTTTGGGGCAAAG CTCGAATCTGCATCTTCAACTATGAGTGGGCCAGGCAGATTCTTTCAAGCAAGTCAGGACACTTTCTGAAGAATGACACTACCCCAACAGTGTTNGGCGTTGCTTNGCAAGGGGACTAGTACTTGTCGAAGGAATTGATTGGGAGCGCCATCGCAGAGTAATC ACCCTGCTTTCACCATNGGATAAGAT AAGGTGATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OS1186A              [                                                                                                                                                                                                                                                                                                                                                                                                                                          CGTTGCTTGGCAA GGGACTAGTACTGGTCGAAGGAATTGATTGGGAGCGCCATCGCAGAGTAATCAACCCTGCTTTCACCAT GGATAAGATAAAGATGATGACAAAAACAATGGTAGCTTGTNCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGGAGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCATACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGANAGAGCTCCAGGAAATTGCTGTAAAATCTCTCCTCAACGGTGCAGATACCAGG     GTTCAGCTACCTTCCTACAAANGGGAATTGGAGG AATTTACACTTGAAAAG AGCTTAGGGGCACTCTCATGCAGTTCATACAATCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_4768#0 AATCCACCACCTCTTTGCCATGGCCTCTCTTGCTCTGGTTTTCCTTGCCCTCTTGTTGCC TACCATCTCATGGCTATGGGACTACATCATTGTGCCCCATATATGGAGGCCTTACATTGC AGCCAAGAGGCTCAGGGAGCAAGGAATCCGTGGACTACCCTACAAGTTCTTGAAAGGCTG CAATGAGGATGTGAAGAAAATGAAGGATGCTGCAGATGATCTGGTTCTTGATGTTCATGA CCACAATTACCTCCCAAGGGTTATGCCATAGTACCTGAAATGGAGATCTCAATATGGAGA GCCCTTTGTATACTGGTTTGGGGCAAAGCCTCGAATCTGCATCTTCAACTATGAGTGGGC CAGGCAGATTCTTTCAAGCAAGTCAGGACACTTTCTGAAGAATGACACTACCCCAACAGT GTTGGCGTTGCTTGGCAAGGGACTAGTACTGGTCGAAGGAATTGATTGGGAGCGCCATCG CAGAGTAATCAACCCTGCTTTCACCATGGATAAGATAAAGATGATGACAAAAACAATGGT AGCTTGTGCTCAAAACATGGTGAAGGAATTGGAAGATCAAGCATCCAGCAACAAGAATGG AGAAACTCAAGTGGAATTGGACAAACAATTCCAAGAGTTAACAGCAGATATCATATCTCA TACGGCCTTCGGAAGCAGCTATAAGTTAGGAATAGAAGCGTTCCATGCACAGAAAGAGCT CCAGGAAATTGCTGTAAAATCTCTCCTCAACGTGCAGATACCAGGATTCAGTTCAGCTAC CTTCCTACAAAAGGGAATTGGAGGAAATTGACACTTGAAAAGAAGCTTAGGGGCACTCTC ATGCAGATCATACAATCCCGATTATCATCAAAAGGAAGTGGATACGGAAGCGATCTCCTT GGTTTGATGCTTGAGGCTTGCATTGCAACAGATCAGGGAAGGGAGCAACATCAGCTCAGC TTAAGCATCGATGAAATTATACATGAGTGCAAAACATTCTTCTTTGCTGGTCATGAAACC ACGTCACTTCTTCTTACCTGGACAGTGTTTTTGCTCAGTGTGTATCCAGAATGGCAGGCA AGACTCCGGTTGGAAGCTTTGAGGGAATGTGGAAAAGAAAATCCAAATGGTGACAACCTT AGCAAACTGAAAGAGATGTCAATGGTATTCCTTGAGACCCTAAGGCTCTATGGTCCTGCT CTTTTCCTTCAAAGAAAACCTCTAACAGATATTACAGTAGGAGAAACAAAAATACCCAAA GACCATGCAATTATCATACCTTCAGCAATTATGCACCGGGACAAGGAGATTTGGGGTGAC GATACAGATGAATTCAATCCATTAAGATTTCAGAACGGGGTCACAAGAGCAGCCAAAGTT CCACATGCCCTACTGGCATTCTCAATAGGGCCAAGGTCTTGCATCGGTCAGAATTTTGCG ATGTTGGAAGCCAAGTCAGTTATGGCTATGATCCTAAAAAAGTTCTCATTCACACTTTCC CCTAACTATGTTCATGCACCTGTAGACCTGTTAACTCTTCAGCCTAAGTTTGGTCTTCCT GTTGTTCTAAGGCTACTGGATGCATGAAGTTAGATGATTTACATGTTACCAAACTTAAAT GGAATCTGTATGCCAAAGGTTGCTACTGACCTACGGCACTATACATTGTACCCCACAGTG GATGTATCCTTATAAAATAAAATAGCTCGGGCCATGATTCAATGTGAATTACT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)