These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 893 fasta sequence [AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCGCCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGTCCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGTGCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTGAGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACGCCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGTGGCCGTCACGTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTAGAAAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAAGCTTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC] [+] EMBL AK099496 [AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCGCCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGTCCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGTGCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTGAGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACGCCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCAGATCGGTGGCCGTCACGTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACACCAGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCCGTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCTGCAGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGAAGAACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTAGAAAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAAGCTTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC] consensusID : consensus_477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [AGNGNACGTGTGGGTTTGATCCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATNTNGCAGTGACCATNAGGTGAGCCTCTNTTCCCTCTGGAATTNACAATATTTAANGTTGATAGCTGGGAATTTNCACTGTAGATTATAGAACAAGGTGAATGTTGAGTTAGTGTCTGGTACTCTGGTTGGTAGCTAGTG] [+] EMBL OSS2139A [AGNGNACGTGTGGGTTTGATCCAGGCTACACTGCTCCTCCCAAGAAAGCTCAACCTGCCCATNTNGCAGTGACCATNAGGTGAGCCTCTNTTCCCTCTGGAATTNACAATATTTAANGTTGATAGCTGGGAATTTNCACTGTAGATTATAGAACAAGGTGAATGTTGAGTTAGTGTCTGGTACTCTGGTTGGTAGCTAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_477#0 AAACAGAGGGGTAGCAGAGGAGCAACCAATCGCGAGAGAGAAGGAAGGTTGAGGAAGAGG 60 consensus_477#1 ------------------------------------------------------------ consensus_477#0 AGGAGGAGGAGGAGGAAGAAGAAGACGAGATGGAGAGAGATGAGGTGTGCTGTTCTTGCG 120 consensus_477#1 ------------------------------------------------------------ consensus_477#0 CCATGAGGCAGTGCAGGATCTGCCATGAGGAGGAGGAGGAAGGGTGCACCGCCATGGAGT 180 consensus_477#1 ------------------------------------------------------------ consensus_477#0 CCCCCTGCGGATGCTCTGGCTCCCTCAAGTACGCGCACAGGGGGTGTGTGCAGAGATGGT 240 consensus_477#1 ------------------------------------------------------------ consensus_477#0 GCGATGAGAAGGGGAGCACGCTCTGCGAGATTTCCCTTCAGAATTTCGAACCAGGCTACA 300 consensus_477#1 -----------------------------AGNGNACGTGTGGGTTT-GATCCAGGCTACA 30 * * * * *** ** ********** consensus_477#0 CTGCTCCTCCCAAGAAAGCTCAACCTGCCCATGTCGCAGTGACCATCAGAGAGAGCCTTG 360 consensus_477#1 CTGCTCCTCCCAAGAAAGCTCAACCTGCCCATNTNGCAGTGACCATNAG-GTGAGCCTCT 89 ******************************** * *********** ** * ****** consensus_477#0 AGGTTCCCAGGCCAAGCTACGAGCCGGAGGACACGCCGTTGATCGGCGAGCAGGATTACG 420 consensus_477#1 NTTCCCTCTGG--AATTNACAATATTTA----ANGTTGATAGCTGGGAATTTNCACTGTA 143 * * ** ** ** * * * * * * ** * * * consensus_477#0 CCGAGTGCGCCGGAGCGGCCGGCAGGAGCGCCACCTGGTGCA--GATCGGTGGCCGTCAC 478 consensus_477#1 GATTATAGAACAAGGTGAATGTTGAGT-TAGTGTCTGGTACTCTGGTTGGTAGCTAGTG- 201 * * * * * * ***** * * * *** ** consensus_477#0 GTTCACGGCTGTTCTGCTGCTGAGGCATCTCGTCGCTGTCGTGACGGTCGGAGCTGCACA 538 consensus_477#1 ------------------------------------------------------------ consensus_477#0 CCAGTACGCCTTCAGCCTCTTGACGATATACTTGCTCCGGGCTAGTGGAATCTTGCTGCC 598 consensus_477#1 ------------------------------------------------------------ consensus_477#0 GTTCTACGTCGTCATGAGGCTCATCTCCACGGTTCAGAAGGGTCAGAGGCAATACCAGCT 658 consensus_477#1 ------------------------------------------------------------ consensus_477#0 GCAGCTGCTCCAGGAGCAAAGGAGAAATGCAGCTAGAATGCACAGGTTGCATGGTCAAGA 718 consensus_477#1 ------------------------------------------------------------ consensus_477#0 AGAACAAAATCAACATGCCATTCTTGTCCGGTGAACAAAGAATGAAGTGGTTCTCCTGTA 778 consensus_477#1 ------------------------------------------------------------ consensus_477#0 GAAAAGACTGCAAAATTGTATTATTACTGATGGGAAAAGGAAAATAAACATTGTTCATAA 838 consensus_477#1 ------------------------------------------------------------ consensus_477#0 GCTTTCCACTATATGTACATGTCCACATTTGTTGCAAAGATGATTACACCAGAGC 893 consensus_477#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||