These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence [GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCAGGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGCCTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATGGTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCGTGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCGTGCATGGACGTGTGCCA-CTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGCTTCGGCCGCGGCCGGGGATGCCA-CTGCAAGTGCTAGCAG-CTGAACTGAGCTGAGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCT-T-TTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTCTGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTTGTTTTAAAAAAAAAA] [+] EMBL AK107070 [GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCAGGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGCCTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATGGTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCGTGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCGTGCATGGACGTGTGCCA CTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGCTTCGGCCGCGGCCGGGGATGCCA CTGCAAGTGCTAGCAG CTGAACTGAGCTGAGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCT T TTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTCTGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTT ] [+] EMBL BI813005 [ ctTGGGTTGACTAACCCTCGGGGTTCCCCT C GGGAGACGATCCC GTGGA CAGTGCGACCC GGCGAC C GCGGCGAACAGCGCGTGCATGGACGTGTGCCACCTACGGCGGATGCCGGCGCGGCGGCGAGTGCGTCTCCCTCGGCTTCGGCC CGGCCGGGGATGCCACCTGCAAGTGCTAGCAGTCTGAACTGAGCTGAGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCCAAGTAGTAGAAGCCGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTCTCTTTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCGCGCTGCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTTTGTTTTAAAAAAAAAA] consensusID : consensus_4776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GTGCGCGCGCGACGGGCGAGGCGGCTTGGGGGACTACCTCGGGGTCCTCGGGGAGACGATCCCGTGGACAGTCGACCCGGCGACGCGCGCGAACAAGCAGCGTGCATGGACGCTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCGGCTTCGGCCCCAGGCACGGGGATGCCACTGCAAGTGCTAGCACTGAACTGAGCTGATGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAACAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTGGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACTGCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTTTGTTTTCTTCCAAAAAAAAAA] [+] EMBL BI801820 [GTGCGCGCGCGACGGGCGAGGCGGCTTGGGGGACTACCTCGGGGTCCTCGGGGAGACGATCCCGTGGACAGTCGACCCGGCGACGCGCGCGAACAAGCAGCGTGCATGGACGCTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCGGCTTCGGCCCCAGGCACGGGGATGCCACTGCAAGTGCTAGCACTGAACTGAGCTGATGCTGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAACAGTAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCTACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTTTCCTGATCTTCGTGTTTGGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACTGCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTTTGTTTTCTTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4776#0 GAGCAAGGCAAAGCAGAGCCGTCAGTTGCGGTCAGTTTCCCTGTCACCTCCAGGCGTCCA 60 consensus_4776#1 ------------------------------------------------------------ consensus_4776#0 GGAACATACACACACATCAAGGTAGTGGTGGCCATGGCCGCGTGCAGGTGCAGCAGCCGC 120 consensus_4776#1 ------------------------------------------------------------ consensus_4776#0 CTCTCCCTGCAGCTGCCTCCTCCGTGCTTGCTCATCGTCCTCGTCGCCGCGGCGGCGATG 180 consensus_4776#1 ------------------------------------------------------------ consensus_4776#0 GTGGCGGCGGCGGCGACAGGGGCGAGGGCGGCGTGGGTGGACTACCCGTCGGGGGTGCCG 240 consensus_4776#1 ------GTGCGCGCGCGACGGGCGAGG-CGGCTTGGG-GGACTACCTC---GGGGTCCT- 48 * * *** * ******** **** **** ******** ***** * consensus_4776#0 TGCGGGGAGACGATCCCGGTGGAGCAGTGCGACCCGGGCGACGCGGCGGCGAACAGCGCG 300 consensus_4776#1 --CGGGGAGACGATCCCG-TGGA-CAGT-CGACCCGG-CGACGCGCGCGAACAAGCAGCG 102 **************** **** **** ******** ******* * * *** consensus_4776#0 TGCATGGACG-TGTGCCACTACGGCGGATGCCGGCGCGGCGGCGA-GTGCGTCTCCCTCG 358 consensus_4776#1 TGCATGGACGCTGTGCCACTACGGCGGATGCCGGCGCGGCGGCGATGTGCGTCTCCCTCG 162 ********** ********************************** ************** consensus_4776#0 GCTTCGGCCGCGGCC--GGGGATGCCACTGCAAGTGCTAGCAGCTGAACTGAGCTGA-GC 415 consensus_4776#1 GCTTCGGCCCCAGGCACGGGGATGCCACTGCAAGTGCTAGCA-CTGAACTGAGCTGATGC 221 ********* * * * ************************* ************** ** consensus_4776#0 TGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAAGCAG 475 consensus_4776#1 TGATCTCTGATCTGAACTGAACTGATATGCTAATCAGGTTGAGCAAAGTAGTAGAA-CAG 280 ******************************************************** *** consensus_4776#0 TAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCT 535 consensus_4776#1 TAATTAGGAGAGAATAAATTAATGAGCGCTAAGCTGCTGTTTGTAGATGCTCGCTTAGCT 340 ************************************************************ consensus_4776#0 ACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTT-TTGTTCCTCTGTTTTT 594 consensus_4776#1 ACTGTCCCGTTGCTGGCTGCCTTGCTAGTTTTCCCGCCCTTTTCTTGTTCCTCTGTTTTT 400 ******************************************* **************** consensus_4776#0 TCCTGATCTTCGTGTTTTGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCC-GCGCT 653 consensus_4776#1 TCCTGATCTTCGTGTTTGGCATGAGTTGGTAGCACATTAGGTTTGCTTTTGTCCAGCACT 460 ***************** ************************************ ** ** consensus_4776#0 GCCTCTCTGTACAAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTGCCTTT 713 consensus_4776#1 GCCTCTCTGTACCAAAGCCTAAGGCGTGAGCTTTGAAAAATGAAATCGCCAGGTCCCTTT 520 ************ ***************************************** ***** consensus_4776#0 TGTTTT-----AAAAAAAAAA 729 consensus_4776#1 TGTTTTCTTCCAAAAAAAAAA 541 ****** ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||