These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence [AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGGCACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTGGCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTCATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCATGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTTTCTGAATAATGCAGTTGATGATT] [+] EMBL AK105208 [AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGGCACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTGGCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTCATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCATGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTTTCTGAATAATGCAGTTGATGATT] [+] EMBL AK062916 [AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGGCACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTGGCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAGGTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCGCCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTCATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCCAAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCATGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATATATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTAC ] consensusID : consensus_4777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [AGCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATATATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761472 [AGCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATATATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACGCAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATCTATAAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4777#0 AGCACGGCTCAGAGTTGCAGACGACGCCGAGAAGACGAAGAAGAAAAGGAAAGCGGCGGG 60 consensus_4777#1 ------------------------------------------------------------ consensus_4777#0 CACGGGATGGAGAGCAAGGTGAGGTGCGTGTGGTTTCTCCTGGTGGTTGCGGTGGTGGTG 120 consensus_4777#1 ------------------------------------------------------------ consensus_4777#0 GCCGCCGGGGTGGAGACCGTGCGCGGCGCGGGGGAGTGCGGCCGCGTCCCCGTGGACCAG 180 consensus_4777#1 ------------------------------------------------------------ consensus_4777#0 GTGGCGCTTAAGCTGGCGCCGTGCGCGGCGGCCACGCAGAACCCGCGCGCCGCGGTGCCG 240 consensus_4777#1 ------------------------------------------------------------ consensus_4777#0 CCCAACTGCTGCGCGCAGGTGCGCAGCATCGGGCGGAACCCCAAGTGCCTGTGCGCCGTC 300 consensus_4777#1 ------------------------------------------------------------ consensus_4777#0 ATGCTGTCGAACACCGCGCGGAGCGCCGGCGTCAAGCCCGCCGTGGCCATGACCATCCCC 360 consensus_4777#1 ------------------------------------------------------------ consensus_4777#0 AAGCGCTGCGCCATCGCCAACCGCCCCATCGGTTACAAATGTGGCCCATACACCCTGCCA 420 consensus_4777#1 -----------------------------------------------------------A 1 * consensus_4777#0 TGAGGAGCAAAGGGATGGAACTGGAAGGGCACTCGAACACTTTGACTATCCGATATATAT 480 consensus_4777#1 GCCGAGACAAGGGGATGGAACTGGAAGGGCCCTCGAACCCTTTGACTATCCGATATATAT 61 * *** ******************* ******* ********************* consensus_4777#0 ATATATAAACTGATGTTACCTTTGTCACGTGAAACTTTTCATAAATCTTTCTAAATAACG 540 consensus_4777#1 ----ATAAACTGATGTTCCCTTTGTCCCGTGAAACTTTTCATAAATCTTTTTAAATAACG 117 ************* ******** *********************** ********* consensus_4777#0 CAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATC 600 consensus_4777#1 CAGTTGTAATGACTCTGTTGAAATAAAGTACCTTTATGACTATCGAATAGTGGTGCTATC 177 ************************************************************ consensus_4777#0 TATAAGAGAACAGTTTGATAAGTTCTGTGAAATTCAAGGATGTGACTTCTCCTGGATCTT 660 consensus_4777#1 TATAAGAGACCAGTTTGATAAAAAAAAAAAAAAAAAAAAA-------------------- 217 ********* *********** *** ** * consensus_4777#0 TCTGAATAATGCAGTTGATGATT 683 consensus_4777#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||