These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1711 fasta sequence [AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGACATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGCTGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAGCATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGGCAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGACGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACACGAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGATCACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCACTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTCCGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGCGGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAAGACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGGGAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGCAAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGCGGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCTCACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTACTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCAATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTTGATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATTAATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCATCCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAGTCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCCGTTCATCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGATCATCGCCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCTGCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAACAAACTTTGACATACATCCATATGTAGTGAGATGAG] [+] EMBL AK106797 [AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGACATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGCTGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAGCATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGGCAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGACGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACACGAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGATCACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCACTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTCCGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGCGGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAAGACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGGGAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGCAAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGCGGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCTCACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTACTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCAATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTTGATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATTAATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCATCCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAGTCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCCGTTCATCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGATCATCGCCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCTGCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAACAAACTTTGACATACATCCATATGTAGTGAGATGAG] [+] EMBL AA750770 [ TGTGACAAGGCTGTTACCAAATGAGTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTCGTGTTCGGGGAGTACAACTCGAAAGGGCCAGGCG GAGCACGAAGCAGAGGGTGCCGTGGTCGCGGAC CTCACCTACGACGAGGCGCGGC ] consensusID : consensus_4780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACNTCACCTACGACGANCNNCGGCGTTCATNNGCCTTCATCAAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCGCGATTCTTACCAGTTCAGAAGTCAGACTGCTG] [+] EMBL AA750006 [TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACNTCACCTACGACGANCNNCGGCGTTCATNNGCCTTCATCAAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCGCGATTCTTACCAGTTCAGAAGTCAGACTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4780#0 AAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGACTAGTTGGA 60 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGC 120 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 TGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAG 180 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGG 240 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGA 300 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACAC 360 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 GAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGAT 420 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCA 480 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTC 540 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGC 600 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 GGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAA 660 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 GACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGG 720 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 GAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGC 780 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 AAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGC 840 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 GGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCT 900 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTA 960 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCA 1020 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 ATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTTGCTGCTCTT 1080 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 GATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACATGGCATATT 1140 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 AATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCAACTTACCAT 1200 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTCACCAAACAG 1260 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 TCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGAGTTCCTTTT 1320 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 CTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAATGACAGAGAA 1380 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 TGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGG 1440 consensus_4780#1 ---------------TGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAAAGGGCCAGG 45 ********************************************* consensus_4780#0 GGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGAGGCGCGGCC 1500 consensus_4780#1 GGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACN-TCACCTACGACGANCNNCGGC- 103 ************************************ ************* **** consensus_4780#0 GTTCATCGGCCGGAGCTTCATCAA--CGGCG--AGCAGTGGCTCCGGCTGTAGATCATCG 1556 consensus_4780#1 GTTCATNNGCC-----TTCATCAAGGCGGCGCTAGCAGTGGCTCCGGCTGTAGATCATCG 158 ****** *** ******** ***** *************************** consensus_4780#0 CCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGCAGTCT 1616 consensus_4780#1 C-GATTCTT-ACCAGTTCAGAAG--TCAGACTGCTG------------------------ 190 * ******* ** ********* *********** consensus_4780#0 GCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCATGTAAC 1676 consensus_4780#1 ------------------------------------------------------------ consensus_4780#0 AAACTTTGACATACATCCATATGTAGTGAGATGAG 1711 consensus_4780#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||