These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 884 fasta sequence [AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAA-GGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGAT-CCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCT] [+] EMBL AK103663 [AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAA GGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGAT CCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTTTATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCT] [+] EMBL CF330194 [ AACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAAGGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCTTCTATTGATCCCTG AAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATT ] consensusID : consensus_4786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGTAATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAATGGCTAAAGGNAATTTTAGGGCTATTTGCAATNCACAACCATAAGNTGGCCACTGNAGTCTCCAGTAAAGAGTAGGGCTGTATGTGGACAATATCAGTTNTCATTNNCCGAGTCATGCAGGAAGA] [+] EMBL C25855 [CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGTTTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGTAATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAATGGCTAAAGGNAATTTTAGGGCTATTTGCAATNCACAACCATAAGNTGGCCACTGNAGTCTCCAGTAAAGAGTAGGGCTGTATGTGGACAATATCAGTTNTCATTNNCCGAGTCATGCAGGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4786#0 --------------------AGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTA 40 consensus_4786#1 CCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTGTA 60 **************************************** consensus_4786#0 ACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGT 100 consensus_4786#1 ACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGT 120 ************************************************************ consensus_4786#0 TTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCT 160 consensus_4786#1 TTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCT 180 ************************************************************ consensus_4786#0 GAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGG 220 consensus_4786#1 GAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGG 240 ************************************************************ consensus_4786#0 TGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGG-AAATGAAGGT 279 consensus_4786#1 TGATCTATGTTTTCATATTTGGTCACGTTCTACCGGTCTTTTTCGATGGGAAATGAAGGT 300 ************************************************* ********** consensus_4786#0 AATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAAT 339 consensus_4786#1 AATTNGAGGAGTTCTATCTGTTTGATGGGATTCAGGACCAAAATCCGGATTCCACAAAAT 360 **** *********************** ****** *********** ************ consensus_4786#0 GGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGG 399 consensus_4786#1 GGCTAAAGGNAA--TTTTAGGGCTATTTGCAATNC-ACAACCATAAGN-TGGCCA-CTG- 414 ***** *** ** ******************* * *********** ****** *** consensus_4786#0 TAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTTTCT 459 consensus_4786#1 -NAGTCTCCAGTAAAGAGTAG-----GGCTG--TATGTGGACAATATCAGTTNTCATTNN 466 ****** ** ** ** **** **** * * ** ** ** consensus_4786#0 TCTATTGATCCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCC 519 consensus_4786#1 CCGAGTCATGCAGGAAGA------------------------------------------ 484 * * * ** * * *** consensus_4786#0 ATGAAAACAATTATCATCAAGAGAATTGAAGATTCTATTTTTTTTTTCTTAGGATCTGCA 579 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 GGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTT 639 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 TATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGAC 699 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 CACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTACATGCATAGTATAATAGATGCA 759 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 ATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGC 819 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 ATGTAATGGTCCTGGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAG 879 consensus_4786#1 ------------------------------------------------------------ consensus_4786#0 TCCCT 884 consensus_4786#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||