cluster # 4788

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Oryza sativa
cluster # 4788 cluster # 4788 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4788#0 length = 1176 sequences # 2

consensus_4788#1 length = 342 sequences # 1

consensusID : consensus_4788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1176
fasta sequence

                              [GGCTGTTGCACTCGCGCTCTTGGCTGCCATGTCGGCGCTCTCGTCGTGCACAAGTCCGGCCACCGCAGAGCTCACACGGCACGAGCACCCGGTGGCCGCCGGCGCGCCGCTGCGCCTCCTCGTCGTCGGCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCCATGACTCCTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGTTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCAGCTCTGAGGAAGATCGACAGCAGGTTCATCTGCATGAGATCCTTCATTGTCAGTGCAGGAATTGTCGATTTCTTCTTTGTCGACACGACCCCGTTTCAGCTCCAGTACTGGACTGATCCTGGAGAAGATCACTATGACTGGAGGGGAGTCGCGCCTCGGGATGCGTACATCGCCAATCTCCTCGAGGATGTTGATGCTGCAATGAAGAAATCAACTGCAACATGGAAGATAGCTGTAGGACATCATACCATGAGGAGTGTGAGTGCCCATGGAGACACCCAGGAGCTCCTTGAGCTTCTCCTTCCTGTCCTCAAGGAAAACGGTGTCGATTTCTACATCAATGGGCATGATCACTGCCTGGAGCACATCAGCAGCAGAAACAGTCCAATTCAGTAC-TTCACTAGTGGAGGCGGATCAAA-GGCAT-GGAGAGGCATTTTTCAA-CAAAACGAAGACAAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGAGCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGCTAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCCTTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTACAATTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAATTAGCAAGTGTTTGATTCTACTAGAGAAAGATCACAGAATGAAGCAGGTGTTTTT]

[+] EMBL AK110804             [GGCTGTTGCACTCGCGCTCTTGGCTGCCATGTCGGCGCTCTCGTCGTGCACAAGTCCGGCCACCGCAGAGCTCACACGGCACGAGCACCCGGTGGCCGCCGGCGCGCCGCTGCGCCTCCTCGTCGTCGGCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGATGGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCCATGACTCCTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGTTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCAGCTCTGAGGAAGATCGACAGCAGGTTCATCTGCATGAGATCCTTCATTGTCAGTGCAGGAATTGTCGATTTCTTCTTTGTCGACACGACCCCGTTTCAGCTCCAGTACTGGACTGATCCTGGAGAAGATCACTATGACTGGAGGGGAGTCGCGCCTCGGGATGCGTACATCGCCAATCTCCTCGAGGATGTTGATGCTGCAATGAAGAAATCAACTGCAACATGGAAGATAGCTGTAGGACATCATACCATGAGGAGTGTGAGTGCCCATGGAGACACCCAGGAGCTCCTTGAGCTTCTCCTTCCTGTCCTCAAGGAAAACGGTGTCGATTTCTACATCAATGGGCATGATCACTGCCTGGAGCACATCAGCAGCAGAAACAGTCCAATTCAGTAC TTCACTAGTGGAGGCGGATCAAA GGCAT GGAGAGGCATTTTTCAA CAAAACGAAGACAAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGAGCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGCTAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCCTTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTACAATTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAATTAGCAAGTGTTTGATTCTACTAGAGAAAGATCACAGAATGAAGCAGGTGTTTTT]
[+] EMBL OSS14915A            [                                                                                                                                                                                                                                                                                                                                                                                                                                           TTCATTGTCAGTGCAGGAATTGTCGATTTCTTCTTTGTCGACACGACCCCGTTTCAGCTCCAGTACTGGACTGATCCTGGAGAAGATCACTATGACTGGAGGGGAGTCGCGCCTCGGGATGCGTACATCGCCAATCTCCTCGAGGATGTTGATGCTGCAATGAAGAAATCAACTGCAACATGGAAGATAGCTGTAGGACATCATACCATGAGGAGTGTGAGTNCCCATGGAGACACCCAGGAGCTCCTTGAGCTTCTCCTTCCTGTCCTCAAGGAAAACGGTGTCGATTTCTACATCAATGGGCATGATCACTGCCTGGAGCACATCAGCAGCAGGAACAGTCCAATTCAGTACTTTCACTAGTGGAGGCGGGTCAAAGGGCATGGGGGAGGCATTTTTCAACCAAAACGGNGGCAAGCTCCAGTTCTTTTATTATGGGCAAGGG TCCTGTCAATTTANCTCAGTTAGAACCG GCT                                                                                                                                                                                                                                                                                   ]




>consensus_4788#0
GGCTGTTGCACTCGCGCTCTTGGCTGCCATGTCGGCGCTCTCGTCGTGCACAAGTCCGGC
CACCGCAGAGCTCACACGGCACGAGCACCCGGTGGCCGCCGGCGCGCCGCTGCGCCTCCT
CGTCGTCGGCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGAT
GGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTT
GGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCCATGACTCCTTCATGGATGTCTA
CACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGTTCTTGGAAACCATGACTACAGGGG
AAATGTGCTAGCACAGATTGACCCAGCTCTGAGGAAGATCGACAGCAGGTTCATCTGCAT
GAGATCCTTCATTGTCAGTGCAGGAATTGTCGATTTCTTCTTTGTCGACACGACCCCGTT
TCAGCTCCAGTACTGGACTGATCCTGGAGAAGATCACTATGACTGGAGGGGAGTCGCGCC
TCGGGATGCGTACATCGCCAATCTCCTCGAGGATGTTGATGCTGCAATGAAGAAATCAAC
TGCAACATGGAAGATAGCTGTAGGACATCATACCATGAGGAGTGTGAGTGCCCATGGAGA
CACCCAGGAGCTCCTTGAGCTTCTCCTTCCTGTCCTCAAGGAAAACGGTGTCGATTTCTA
CATCAATGGGCATGATCACTGCCTGGAGCACATCAGCAGCAGAAACAGTCCAATTCAGTA
CTTCACTAGTGGAGGCGGATCAAAGGCATGGAGAGGCATTTTTCAACAAAACGAAGACAA
GCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGAGC
TCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGC
TAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCC
TTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTACAA
TTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAATTAGCAAGTGTTTGATTCT
ACTAGAGAAAGATCACAGAATGAAGCAGGTGTTTTT

consensusID : consensus_4788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GAGGCGGGATCAAAGGCATGGAGAGGGCATTTTTCAACAAAACGAAGACAAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGAGCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGCTAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCCTTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTACAATTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAAAAAAAAAAAA]

[+] EMBL AU075505             [GAGGCGGGATCAAAGGCATGGAGAGGGCATTTTTCAACAAAACGAAGACAAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGAGCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGCTAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCCTTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTACAATTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAAAAAAAAAAAA]




>consensus_4788#1
GAGGCGGGATCAAAGGCATGGAGAGGGCATTTTTCAACAAAACGAAGACAAGCTCCAGTT
CTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGAGCTCGATTCGC
CTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAAGCTAATCTGCA
GAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAGCCTTCAGAATA
CATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTACAATTATGTCAC
ATTGTGCTCATCAATACTGGATTTGCTATGAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4788#0      GGCTGTTGCACTCGCGCTCTTGGCTGCCATGTCGGCGCTCTCGTCGTGCACAAGTCCGGC 60
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CACCGCAGAGCTCACACGGCACGAGCACCCGGTGGCCGCCGGCGCGCCGCTGCGCCTCCT 120
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CGTCGTCGGCGACTGGGGCCGGAAGGGCGGCTACAACCAGACAAGAGTTGCAGAACAGAT 180
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      GGGGAAGGTTGCGGAGGAGACGGAGATCGACTTCGTCGTGTCAACCGGCGACAACTTCTT 240
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      GGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCCATGACTCCTTCATGGATGTCTA 300
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGTTCTTGGAAACCATGACTACAGGGG 360
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      AAATGTGCTAGCACAGATTGACCCAGCTCTGAGGAAGATCGACAGCAGGTTCATCTGCAT 420
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      GAGATCCTTCATTGTCAGTGCAGGAATTGTCGATTTCTTCTTTGTCGACACGACCCCGTT 480
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      TCAGCTCCAGTACTGGACTGATCCTGGAGAAGATCACTATGACTGGAGGGGAGTCGCGCC 540
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      TCGGGATGCGTACATCGCCAATCTCCTCGAGGATGTTGATGCTGCAATGAAGAAATCAAC 600
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      TGCAACATGGAAGATAGCTGTAGGACATCATACCATGAGGAGTGTGAGTGCCCATGGAGA 660
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CACCCAGGAGCTCCTTGAGCTTCTCCTTCCTGTCCTCAAGGAAAACGGTGTCGATTTCTA 720
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CATCAATGGGCATGATCACTGCCTGGAGCACATCAGCAGCAGAAACAGTCCAATTCAGTA 780
consensus_4788#1      ------------------------------------------------------------
                                                                                  

consensus_4788#0      CTTCACTAGTGGAGGCGG-ATCAAAGGCATGGAGAGG-CATTTTTCAACAAAACGAAGAC 838
consensus_4788#1      -----------GAGGCGGGATCAAAGGCATGGAGAGGGCATTTTTCAACAAAACGAAGAC 49
                                 ******* ****************** **********************

consensus_4788#0      AAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGA 898
consensus_4788#1      AAGCTCCAGTTCTTCTATGATGGACAAGGGTTCCTGTCACTTGAGCTCAGTGAGAACCGA 109
                      ************************************************************

consensus_4788#0      GCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAA 958
consensus_4788#1      GCTCGATTCGCCTTCTACGACGTTTTCGGTGAAGCTTTGTACCACTGGAGCTTCAGCAAA 169
                      ************************************************************

consensus_4788#0      GCTAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAG 1018
consensus_4788#1      GCTAATCTGCAGAAGGTTCAGTCCTCTGCTAGTGTAACTGAAGAATGAGAGAAGCTGGAG 229
                      ************************************************************

consensus_4788#0      CCTTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTAC 1078
consensus_4788#1      CCTTCAGAATACATTCCCACACAGCTGAGTAGATGTCTACCTGCATAATTCTACTTGTAC 289
                      ************************************************************

consensus_4788#0      AATTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAATTAGCAAGTGTTTGATT 1138
consensus_4788#1      AATTATGTCACATTGTGCTCATCAATACTGGATTTGCTATGAAAAAAAAAAAA------- 342
                      *******************************************  *  **          

consensus_4788#0      CTACTAGAGAAAGATCACAGAATGAAGCAGGTGTTTTT 1176
consensus_4788#1      --------------------------------------