These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGAAGCTCATCACCGGCGCCCTCCCCCAAGCGCGGGCAAGAAGAAAAAGAAGGGCAATCGCCTTCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCAGCGGGAGAAGAGGCTCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGTGTTGCGGCCACTGTGGCCTCCGCCCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGATTTGTTCTTGTGATTTGTTAAAAAA] [+] EMBL BI795753 [CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGAAGCTCATCACCGGCGCCCTCCCCCAAGCGCGGGCAAGAAGAAAAAGAAGGGCAATCGCCTTCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCAGCGGGAGAAGAGGCTCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGTGTTGCGGCCACTGTGGCCTCCGCCCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGATTTGTTCTTGTGATTTGTTAAAAAA] consensusID : consensus_4793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCGCCTTCCCATTCCCCACCCGCCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCGCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029567 [GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCGCCTTCCCATTCCCCACCCGCCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCGCCCGCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGCCACGAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCTCTTGGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU222494 [ CCACGAGCGTTGCGGCCACTGTGGCCTCCGCCG CCGCTCTGCTCGCCGCGTCGTTCTTGTGAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGATGCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGTGTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGATCCTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGTTTTTCaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4793#0 CCACTTCCCCGCGCCGGCGCCGGACCGCAAATCGATGTGCCACCCTTCTCCCGCGCCAGA 60 consensus_4793#1 ------------------------------------------------------------ consensus_4793#0 AGCTCATCACCGGCGCCCTCCCCCAAGC--GCGGGCAAGAAGAAAAAGAAGGGCAA-TCG 117 consensus_4793#1 -GCTCCTCGCCGGCGCCNTCCCCCAAGGCGGCGGGCAAGAAGAAAAAGAAGGGCAAGTCG 59 **** ** ******** ********* ************************** *** consensus_4793#0 CCTTCCCATTCCCCACCCGCGCCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCG 177 consensus_4793#1 CCTTCCCATTCCCCACCCGC-CCTCCGGCCGACACGCCTGACATGTCGCCCGCCGACGCG 118 ******************** *************************************** consensus_4793#0 CCCAGCGGGAGAAGAGGCT-CAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGC 236 consensus_4793#1 CCC-GCGGGAGAAGAGGCTGCAGACAAAGCCGAGAAGAAGAACGGCGCCACCGCGGCGGC 177 *** *************** **************************************** consensus_4793#0 CACGAGTGTTGCGGCCACTGTGGCCTCCGCC--CCGCTCTGCTCGCCGCGTCGTTCTTGT 294 consensus_4793#1 CACGAGCGTTGCGGCCACTGTGGCCTCCGCCGNCCGCTCTGCTCGCCGCGTCGTTCTTGT 237 ****** ************************ *************************** consensus_4793#0 GAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCC-TGGGCATGCATGGTGTGAT 353 consensus_4793#1 GAGCGTCAGGTGTTCGACGTTGAGCTCTCGTTGTTCCCCCCTGGGCATGCATGGTGTGAT 297 **************************************** ******************* consensus_4793#0 GCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGT 413 consensus_4793#1 GCAGTCCGGTGTTCGCTTCTGAGCTCGTGGGCTCCATGGATAATCTCATCCTGAAGTTGT 357 ************************************************************ consensus_4793#0 GTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGGGATC 473 consensus_4793#1 GTTCTTCTCTTCCTGGTTGGTAGTACTCGGTAGTTAGATAGGATTTGAATGATTGG-ATC 416 ******************************************************** *** consensus_4793#0 CTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGT 533 consensus_4793#1 CTCAGGTGGAGAACGGTGATTGTGATGCCTATTTTGTTAGAGCTCGGAACCATGTTTTGT 476 ************************************************************ consensus_4793#0 TTTTCTCTTGGATTTGTTCTTGTGATTTGTTAAAAAA 570 consensus_4793#1 TTTTCTCTTGGAA------AAAAAAAAAAAAAAAAAA 507 ************ * ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||