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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4797#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1061 fasta sequence
[GATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAATATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAACTCAATGGCACAATAAGGGGTCTTAAAGGTTGTCACCAAAATTGTAATCACTTCAAAAGGTTGCAAATAATTGATTTGGCCTCCAACCATTTCTCTGGCAACATACATCCAGAATGGTTTGAGCATTTTCAATCAATGATGGAAAATGACAACGATGAGGGACACATATTAGAGCATACCACAAACACAAAAATACCATTGCTCTATCAGGATATTACGGTTGTCAATTACAAAGGGGGCACTCTTATGTTCACTAAAATCCTAACCACCTTCAAAGTAATTGATCTCTCAGATAACTCATTTGGTGGTCCTATTCCAAAGTCATTGGGGAAGCTTGTTTCACTACGTGGACTTAACCTGTCACACAATGCCTTCACAGGACACATTCCATCGCAGCTTAATTCTCTGACTCAGCTGGAGTCATTGGATCTTTCTTGGAACAAACTCTCAGGGGAAATCCCTCCTGAGTTAGCTTCTCTAACTTCTCTTGCTTGGTTGAATCTTTCGTACAACAACTTGACCAGAAGAATACCGCAGGGTAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTCTGTGGAAAGCCACTCTCTAAACAATGTGATACTCCAGGCTCAACATCTCCAAGTGCATCAGCTCCTTCAGGTACCAACAGTTTCTGGCAGGACAGACTTGGCGTGATCCTTTTGTTCATCTTTTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATCGCAAAAAACGATGATTGTTAGTATACACTATATGTATGGTGTTTATCCACCTACGGACATGATATATGTGTATGTGTGTACTCGTAATTAGTGAGAATTTAAATTCATT]
[+] EMBL AK108785 [GATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAATATTTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGTAAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACAAACTCAATGGCACAATAAGGGGTCTTAAAGGTTGTCACCAAAATTGTAATCACTTCAAAAGGTTGCAAATAATTGATTTGGCCTCCAACCATTTCTCTGGCAACATACATCCAGAATGGTTTGAGCATTTTCAATCAATGATGGAAAATGACAACGATGAGGGACACATATTAGAGCATACCACAAACACAAAAATACCATTGCTCTATCAGGATATTACGGTTGTCAATTACAAAGGGGGCACTCTTATGTTCACTAAAATCCTAACCACCTTCAAAGTAATTGATCTCTCAGATAACTCATTTGGTGGTCCTATTCCAAAGTCATTGGGGAAGCTTGTTTCACTACGTGGACTTAACCTGTCACACAATGCCTTCACAGGACACATTCCATCGCAGCTTAATTCTCTGACTCAGCTGGAGTCATTGGATCTTTCTTGGAACAAACTCTCAGGGGAAATCCCTCCTGAGTTAGCTTCTCTAACTTCTCTTGCTTGGTTGAATCTTTCGTACAACAACTTGACCAGAAGAATACCGCAGGGTAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTCTGTGGAAAGCCACTCTCTAAACAATGTGATACTCCAGGCTCAACATCTCCAAGTGCATCAGCTCCTTCAGGTACCAACAGTTTCTGGCAGGACAGACTTGGCGTGATCCTTTTGTTCATCTTTTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATCGCAAAAAACGATGATTGTTAGTATACACTATATGTATGGTGTTTATCCACCTACGGACATGATATATGTGTATGTGTGTACTCGTAATTAGTGAGAATTTAAATTCATT]
consensusID : consensus_4797#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence
[TAGTGGCGCCATCTATAAGCAATGTGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTCTTGAACACCTGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGACGAAGCAGACGGACAGGACGGGACATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCCCCTCATCCTCACCCCCTTACAACCTCATGCCCCATTCCGGCGAGGTCCAAGTGGTGGCGGTTATCACGGATTGGGATGTGCGGGACCGCCTGAGGTGGGGGAGAAGGACAGCGAGGGGTGGAAGTCTCGCCGCAGCTGGTGGCGGCGCCGCCGCAGGCCCTCCAGGGCGGCATGCGCTTCAGCCTTCAGGCAGGGCGTGCACCATGCAGGAGAGGGAGATCGTTCCGAGCTCGCCAGGAGGATGGCCGGGAGAGATCCCCGCCCTTGTGCAGACGCTGCCGCCTCTGACCCGCCGCTGCACATCTTCAATCGCCGGCCGGGTCGCCGGGAAAGCAGCCGGAGGCGGGACATGGCCGCGGCCCCGTCTGGTGTTCGCCGCAACATAACAGGCTTTCCGTGGGCCTCCAAACATCTCGGCCCGTACATGTCGAAGTAGTTGACCTAGTAAACGGCCCACTGCCTAGACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGCACCATCGGTCTATCGCGCTCACCCGCCCAGTCACGGTCTCACGGAGGCGTAGAAGTGATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTTCTTTTAATGGTAGATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGA]
[+] EMBL AK108484 [TAGTGGCGCCATCTATAAGCAATGTGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTCTTGAACACCTGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGACGAAGCAGACGGACAGGACGGGACATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCCCCTCATCCTCACCCCCTTACAACCTCATGCCCCATTCCGGCGAGGTCCAAGTGGTGGCGGTTATCACGGATTGGGATGTGCGGGACCGCCTGAGGTGGGGGAGAAGGACAGCGAGGGGTGGAAGTCTCGCCGCAGCTGGTGGCGGCGCCGCCGCAGGCCCTCCAGGGCGGCATGCGCTTCAGCCTTCAGGCAGGGCGTGCACCATGCAGGAGAGGGAGATCGTTCCGAGCTCGCCAGGAGGATGGCCGGGAGAGATCCCCGCCCTTGTGCAGACGCTGCCGCCTCTGACCCGCCGCTGCACATCTTCAATCGCCGGCCGGGTCGCCGGGAAAGCAGCCGGAGGCGGGACATGGCCGCGGCCCCGTCTGGTGTTCGCCGCAACATAACAGGCTTTCCGTGGGCCTCCAAACATCTCGGCCCGTACATGTCGAAGTAGTTGACCTAGTAAACGGCCCACTGCCTAGACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGCACCATCGGTCTATCGCGCTCACCCGCCCAGTCACGGTCTCACGGAGGCGTAGAAGTGATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTTCTTTTAATGGTAGATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGA]
consensusID : consensus_4797#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[GGGCGAGNAAGGGTTAGACAGTTTGGGCTACAGCAGCGNGGAATCATATCAATATTCATGTGCACCTACCCCTTGGCGTGGATGAGCCCCTTGTCTCGTCCACTTGGAACAAGCTCTCAGGGGAAATCCCTCNTGAGTTAGCTTCTCTANCTTCTCTTGCTTGGTTGAATCTTTCATAGAACAACTTGACAGGAAGAATACTGCAGGGCAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTATGTGGAAGGCCACTCTCTAAACAATGTGATACTCCAGGCTCANCATCTCCAAGTGAATCAGCTCCTTCAGATACCAACAGTTTCTGGCAGGACAGACTTGGTGTGATCCTTTTGTTCATCTTGTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGTGCAGTGGGCCGGTGGCGCATTCTCTCGAACANCCGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGNCGAAGCAGACGGACGGGACGGGNCATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCACCTC]
[-] EMBL CA765320 [GGGCGAGNAAGGGTTAGACAGTTTGGGCTACAGCAGCGNGGAATCATATCAATATTCATGTGCACCTACCCCTTGGCGTGGATGAGCCCCTTGTCTCGTCCACTTGGAACAAGCTCTCAGGGGAAATCCCTCNTGAGTTAGCTTCTCTANCTTCTCTTGCTTGGTTGAATCTTTCATAGAACAACTTGACAGGAAGAATACTGCAGGGCAACCAGTTCGGGTCATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTATGTGGAAGGCCACTCTCTAAACAATGTGATACTCCAGGCTCANCATCTCCAAGTGAATCAGCTCCTTCAGATACCAACAGTTTCTGGCAGGACAGACTTGGTGTGATCCTTTTGTTCATCTTGTCTGGCCTGGGGTTCACAGTGGGCTTCATATTGGCAGTCTGTGCAGTGGGCCGGTGGCGCATTCTCTCGAACANCCGGTGGCCCTCGTGGTGTGGTGGTGGAAGAAGAGGGCGATGNCGAAGCAGACGGACGGGACGGGNCATCCCAGTAGCGATCCATTGATTGCCGACTGCAATATCTGCTTGAAAAGTGCAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCACCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4797#0 GATGTGAATGGAAACCAAATTGAAGGTAAACTACCTAGATCACTATCATACTGCCAATAT 60
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 ------------------------------------------------------------
consensus_4797#0 TTGGAGCTCCTGGATGCTGGAAATAATCAGATTGTTGATTCTTTTCCATTTTGGTTGGGT 120
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 ----------------------------------------------------TAGTGGCG 8
consensus_4797#0 AAACTTCCAAATCTCCGAGTCCTTGTCTTAAGATCCAACA-AACTCAATGGCACAATAAG 179
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 CCATCTATAAGCAATGTGCTCTTTGCGCTAACCTGTGCGGTGGGCCGGTGGCGCATTCTC 68
consensus_4797#0 GGGTCTTAAAGGTTGTCACCAAAATTGTAATCACTTCAAAAGGTTGCAAATAATTGATTT 239
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 TTGAACACCTGGTGGCCCTCGTGGT-GTGGTGGTGGAAGAAGAGGGCGA-TGACGAAGCA 126
consensus_4797#0 GGCCTCCAACCATTTCTCTGGCAACATACATCCAGAATGGTTTGAGCATTTTCAATCAAT 299
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 GACGGACAGGACGGGACATCCCAGTAGCGATCC---ATTGATTGC-CGACTGCAATATCT 182
consensus_4797#0 GATGGAAAATGACAACGATGAGGGACACATATTAGAGCATACCACAAACACAAAAATACC 359
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 GCTTGAAAAGTGCAACATCTGGAACCTTGGAT---ACCATCTCACCTTCCTCTCCGCCCC 239
consensus_4797#0 ATTGCTCTATCAGGATATTACGGTTGTCAATTACAAAGGGGGCACTCTTATGTTCACTAA 419
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 CCTCATCC-TCACCCCCTTACAACC-TCATGCCCCATTCCGGCGAGGTCCAAGTGGTGGC 297
consensus_4797#0 AATCCTAACCACCTTCAAAGTAATTGATC-TCTCAGATAACTCATTTGGTGGTCCTATTC 478
consensus_4797#2 ------------------------------------------------------------
consensus_4797#1 GGTTATCACGGATTGGGATGTGCGGGACCGCCTGAGGTGGGGGAGAAGGACAGCGAGGGG 357
consensus_4797#0 CAAAGTCATTGGGGAAGCTTGTTTCACTACGTGGACTTAACCTGTCACACAATGCCTTCA 538
consensus_4797#2 ----------GGGCGAGNAAGGGTTA----GACAGTTTGGGCTACAGCAGCGNGGAATCA 46
consensus_4797#1 TGGAAGTCTCGCCGCAGCTGGTGGCG--GCGCCGCCGCAGGCCCTCCAGGGCGGCATGCG 415
* ** * * * * *
consensus_4797#0 CAGGACACATTCCATCGCAGCTTAATTCTCTGACTCAGCTGGAGTCATTGGATCTTTC-- 596
consensus_4797#2 TATCA-ATATTCATGTGCACCT--ACCCCTTGGCGTGGATGAGCCCCTTGTCTCGTCCAC 103
consensus_4797#1 CTTCA-GCCTTCAGGCAGGGCGT-GCACCATGCAGGAGAGGGAGATCGTTCCGAGCTCGC 473
* *** * * ** * * * *
consensus_4797#0 TTGGAACAAACTCTCAGGGGAAATCCCTCCTGAGTTAGCTTCTCTAACTTCTCTTGCTTG 656
consensus_4797#2 TTGGAACAAGCTCTCAGGGGAAATCCCTCNTGAGTTAGCTTCTCTANCTTCTCTTGCTTG 163
consensus_4797#1 CAGGAGGATGGCCGGGAGAGATCCCCGCCCTTGTGCAGACGCTGCCGCCTCTGACCCGCC 533
*** * * * ** ** * * ** ** * *** *
consensus_4797#0 GTTGAATCTTTCGTACAACAACTTGACCAGAAGAATACCGCAGGGTAACCAGTT-CGGGT 715
consensus_4797#2 GTTGAATCTTTCATAGAACAACTTGACAGGAAGAATACTGCAGGGCAACCAGTT-CGGGT 222
consensus_4797#1 GCTGCACATCTT---CAATCGCCGGCCGGGTCGC---CGGGAAAGCAGCCGGAGGCGGGA 587
* ** * * * ** * * * * * * * * * * ** * ****
consensus_4797#0 CATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTCTGTGGAA-AGCCACTCTCTAAA 774
consensus_4797#2 CATTTAGCAACAGCTCCTTTGAAGGTAATGTCAACCTATGTGGAA-GGCCACTCTCTAAA 281
consensus_4797#1 CA--TGGCCGCGGCCCCGTC-----TGGTGTTCGCCGCAACATAACAGGCTTTCCGTGGG 640
** * ** * ** ** * * *** ** ** * * ** *
consensus_4797#0 CAATGTGATACTCCAGGCTCAACATCTCCAAGTGCATCAGCTCCTTCAGGTACCAACAGT 834
consensus_4797#2 CAATGTGATACTCCAGGCTCANCATCTCCAAGTGAATCAGCTCCTTCAGATACCAACAGT 341
consensus_4797#1 CCTCCAAACATCTCGGCCCGTACATGTCGAAGTA-GTTGACCTAGTAAACGGCCCACTGC 699
* * * * * * *** ** **** * * * * ** ** *
consensus_4797#0 TTCTGGCAGGACAGACTTGGCGTGATCCTTTTGTT-CATCTTTTCTGGCCTGGGGTTCAC 893
consensus_4797#2 TTCTGGCAGGACAGACTTGGTGTGATCCTTTTGTT-CATCTTGTCTGGCCTGGGGTTCAC 400
consensus_4797#1 CTA-GACAGCACATGGACACATGGATGGGCCGACAACATCACGGCCTGTTCAGAGACCGC 758
* * *** *** *** **** * * * * * *
consensus_4797#0 AGTGG-GCTTCATATTGGCAGTCTGGTTCGAATCATTGTGCCACATAGAACGATGGAATC 952
consensus_4797#2 AGTGG-GCTTCATATTGGCAGTCTGTGCAGTGGGCCGGTGGCGCATTCTCTCGAACANCC 459
consensus_4797#1 ACCATCGGTCTATCGCGCTCACCCG--CCCAGTCACGGT--CTCACGGAGGCGTAGAAGT 814
* * * ** * * * ** * ** *
consensus_4797#0 GCAAAAAACGATGATTGTTAGTATACACTATATGTATGGTGTTTATCCA--CCTACGG-A 1009
consensus_4797#2 GGTGGCCCTCGTGGT-GTGGTGGTGGAAGAAGAGGGCGATGNCGAAGCAGACGGACGGGA 518
consensus_4797#1 GATCGAAGTGTTAAATCCTAGATTTCACACTGCTAATTGTATTTCTTTT----AATGGTA 870
* * * * * * ** *
consensus_4797#0 CATG-ATATATGTGTATGTGTGTACTCGTAATTAGTGAG--AATTTAAATTCATT----- 1061
consensus_4797#2 CGGG-NCATCCCAGTAGCGATCCATTGATTGCCGACTGC--AATATCTGCTTGAAAAGTG 575
consensus_4797#1 GATGTACACGTTGACGGCAAGGCGCATGTAATAATTTTATTAATCTTAAGATATACCGA- 929
* * * *** *
consensus_4797#0 -------------------------------------------------
consensus_4797#2 CAACATCTGGAACCTTGGATACCATCTCACCTTCCTCTCCGCCCACCTC 624
consensus_4797#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||