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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence
[GGCTCAGAAACCGCCTACAAAACGGCGCCCGGCGTCCCACGGATCAAGCGACCCCCTAAAAAACCAACCGAAAAAGAAAAAAAAAAGAAGCAGAG-AAAAAAGCTCTCGCGGCATGGATTCGCACGTAGGCAAGTTATTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCCCTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGAAGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCCTGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCCACTGCAGACAAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTATACAAGGAGTCGGCAGCTTTTGGAAAGATGCTTAGAGATTCAACCTGACTGGAGGCAAGCTCTCACTTTACAAAGGCTTGTTGAGGACAAAACCAGAAGAGACGGTATGATTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCATCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGTGAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATTTTGCTGTCATACTTGTTGCAACCGTATACTCACGTCTCCATTTTTCAG-TCCTTTTACCATGAGTTCAAACAGGAGACATCACATG-CCTGCATGTTAAACATCATGGAAGATGAGGAGGCTCCTGTTATGAGTTGCAATCAGGATTTACGTAA]
[+] EMBL AK105146 [GGCTCAGAAACCGCCTACAAAACGGCGCCCGGCGTCCCACGGATCAAGCGACCCCCTAAAAAACCAACCGAAAAAGAAAAAAAAAAGAAGCAGAG AAAAAAGCTCTCGCGGCATGGATTCGCACGTAGGCAAGTTATTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCCCTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGAAGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCCTGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCCACTGCAGACAAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTATACAAGGAGTCGGCAGCTTTTGGAAAGATGCTTAGAGATTCAACCTGACTGGAGGCAAGCTCTCACTTTACAAAGGCTTGTTGAGGACAAAACCAGAAGAGACGGTATGATTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCATCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGTGAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATTTTGCTGTCATACTTGTTGCAACCGTATACTCACGTCTCCATTTTTCAG TCCTTTTACCATGAGTTCAAACAGGAGACATCACATG CCTGCATGTTAAACATCATGGAAGATGAGGAGGCTCCTGTTATGAGTTGCAATCAGGATTTACGTAA]
[+] EMBL CA767290 [ TAAAAAACCAACCGAAAAAG AAAAAAAAAGAAGCAGAGAAAAAAAGCTCTCGCGGCATGGATTCGCACGTAGGCAAGTTCTTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCCCTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGAAGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCCTGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCCACTGCAGACGAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTATACAAGGAGTCGGCAGCTTTTGGAAAGATGCTTAGAGATTCAACCTGACTGGAGGCAAGCTCTCACTTTACAAAGGCTTGTTGAGGACAAAACCAGAAGAGACGGTATGATTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCATCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGTGAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATCTTGCTGTCACACTTGTTGCAACCGTATACTCACGTCTCCATTTTTCAGTTCCTTTTACCATGAGTTCAAACAAGAGACATCACATGNCCTGCATGTTAAACATCATGGAAGATGAGGAGGCTNCTGTTATGAGTTGCAATCAGG ]
consensusID : consensus_4798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TTTCTCCAAGGCGGTGGCCGCGCTTTTGAAAAGATCCTTAAAGGCGTTCCCCCTGCGCGGAGGGCAAGGCTCTCTCCTTCTCAAAGCGCTTGTGGAGACCAAAAACCAGAAGAACCGGGTATGATTGGCACGGCTATTGTCCATGGGGCCTTCGGACTTGTGGGCCTTGTTGCTGGGGAAATCATAACGCCCGCTTTTTGTTCATCCTCATCCTCTAGGAAGAAATAAGGACCCCATATCAAGTGAATAAGATGTCAAGGTGGGCAAGAAATCAATGTAAGTATGCGCATCTTGCTGTCATACTTGTTGCAACCGTATACTCAGGTTTCCATTTTTCAGTCCTTTTACCATGAGTTCAACCAAGAGCCATCCCAGGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCCCCTGTTTTGAGTTCCAATCAGGATTTACGTAACCGTGTGGTTATCATGATTATCATGGCCAGTAATTTTCTCAGTTTTTGAAACCCCGGTAAACCTCCCGGTGGCCGCCCGGTTACCCCGATAACTGTCTTACCGTGGGGTGGTTGTAACCCCGCTCAAAATGGTTTGGTAAACCTGGTTGCAATCCTTCAGTACTTGAACTGATGGCTACTCCCTTAAATTGTGGAGTAAAATTTTAATTACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761386 [TTTCTCCAAGGCGGTGGCCGCGCTTTTGAAAAGATCCTTAAAGGCGTTCCCCCTGCGCGGAGGGCAAGGCTCTCTCCTTCTCAAAGCGCTTGTGGAGACCAAAAACCAGAAGAACCGGGTATGATTGGCACGGCTATTGTCCATGGGGCCTTCGGACTTGTGGGCCTTGTTGCTGGGGAAATCATAACGCCCGCTTTTTGTTCATCCTCATCCTCTAGGAAGAAATAAGGACCCCATATCAAGTGAATAAGATGTCAAGGTGGGCAAGAAATCAATGTAAGTATGCGCATCTTGCTGTCATACTTGTTGCAACCGTATACTCAGGTTTCCATTTTTCAGTCCTTTTACCATGAGTTCAACCAAGAGCCATCCCAGGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCCCCTGTTTTGAGTTCCAATCAGGATTTACGTAACCGTGTGGTTATCATGATTATCATGGCCAGTAATTTTCTCAGTTTTTGAAACCCCGGTAAACCTCCCGGTGGCCGCCCGGTTACCCCGATAACTGTCTTACCGTGGGGTGGTTGTAACCCCGCTCAAAATGGTTTGGTAAACCTGGTTGCAATCCTTCAGTACTTGAACTGATGGCTACTCCCTTAAATTGTGGAGTAAAATTTTAATTACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4798#0 GGCTCAGAAACCGCCTACAAAACGGCGCCCGGCGTCCCACGGATCAAGCGACCCCCTAAA 60
consensus_4798#1 ------------------------------------------------------------
consensus_4798#0 AAACCAACCGAAAAAGAAAAAAAAAAGAAGCAGAGAAAAAAGCTCTCGCGGCATGGATTC 120
consensus_4798#1 ------------------------------------------------------------
consensus_4798#0 GCACGTAGGCAAGTTATTCGATTCGGTGGGCTCGATCTTCCGCGGCAGCGACACCCTCCC 180
consensus_4798#1 ------------------------------------------------------------
consensus_4798#0 CTGGTGCGACCGCGACATCATCGCTGGTTGTGAGAACGAGGTTGCGGAGGCTGCGAATGA 240
consensus_4798#1 ------------------------------------------------------------
consensus_4798#0 AGAACAGAAGAATGAGAGCCTTATGAGGCTTTCGTGGGCGCTTGTTCACTCCAGACAGCC 300
consensus_4798#1 ------------------------------------------------------------
consensus_4798#0 TGAGGATGTGAACCGCGGCATTGGAATGCTTCAAGCTTCTTTGGACAGGTCTACCAGTCC 360
consensus_4798#1 ------------------------------------------------------------
consensus_4798#0 ACTGCAGACAAGGGAGAAGCTCTACTTACTGGCTGTTGGACACTACAGAACTGGTGATTA 420
consensus_4798#1 --------------------------------------------------------TTTC 4
**
consensus_4798#0 TACAAGGAGTCGGCAGC--TTTTGGAAAGATGCTTAGAGA--TTCAACCTGACTGGAGG- 475
consensus_4798#1 TCCAAGGCGGTGGCCGCGCTTTTGAAAAGATCCTTAAAGGCGTTCCCCCTGCGCGGAGGG 64
* ***** * *** ** ***** ****** **** ** *** **** *****
consensus_4798#0 CAAG---CTCTCACTTTACAAAGGCTTGTTGAGGACAAAA-CCAGAAGAGACGG-TATGA 530
consensus_4798#1 CAAGGCTCTCTCCTTCTCAAAGCGCTTGTGGAGACCAAAAACCAGAAGAACCGGGTATGA 124
**** ***** * * ** ****** *** ***** ******** *** *****
consensus_4798#0 TTGGCATGGCTATTGTCACTGGTGCCTTCGGACTTGTGGGACTTGTTGCTGGTGGAATCA 590
consensus_4798#1 TTGGCACGGCTATTGTCCATGGGGCCTTCGGACTTGTGGGCCTTGTTGCTGGGGAAATCA 184
****** ********** *** ***************** *********** * *****
consensus_4798#0 TCGCTGCCGCTTCTTCTTCATCCTCATCATCTAGGAAGAAATGAGGAACCCATATCAAGT 650
consensus_4798#1 TAACGCCCGCTTTTTGTTCATCCTCATCCTCTAGGAAGAAATAAGGACCCCATATCAAGT 244
* * ****** ** ************ ************* **** ************
consensus_4798#0 GAATAAGATGTCAAGATGGGCAAGAAATCGATGTAAATATGCGCATTTTGCTGTCATACT 710
consensus_4798#1 GAATAAGATGTCAAGGTGGGCAAGAAATCAATGTAAGTATGCGCATCTTGCTGTCATACT 304
*************** ************* ****** ********* *************
consensus_4798#0 TGTTGCAACCGTATACTCACGTCTCCATTTTTCAGTCCTTTTACCATGAGTTCAAACAGG 770
consensus_4798#1 TGTTGCAACCGTATACTCAGGTTTCCATTTTTCAGTCCTTTTACCATGAGTTCAACCAAG 364
******************* ** ******************************** ** *
consensus_4798#0 AGACATCACATGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCTCCTGTTATGAGTT 830
consensus_4798#1 AGCCATCCCAGGCCTGCATGTTAAACATCATGGAAGATGAGGAGGCCCCTGTTTTGAGTT 424
** **** ** *********************************** ****** ******
consensus_4798#0 GCAATCAGGATTTACGTAA----------------------------------------- 849
consensus_4798#1 CCAATCAGGATTTACGTAACCGTGTGGTTATCATGATTATCATGGCCAGTAATTTTCTCA 484
******************
consensus_4798#0 ------------------------------------------------------------
consensus_4798#1 GTTTTTGAAACCCCGGTAAACCTCCCGGTGGCCGCCCGGTTACCCCGATAACTGTCTTAC 544
consensus_4798#0 ------------------------------------------------------------
consensus_4798#1 CGTGGGGTGGTTGTAACCCCGCTCAAAATGGTTTGGTAAACCTGGTTGCAATCCTTCAGT 604
consensus_4798#0 ------------------------------------------------------------
consensus_4798#1 ACTTGAACTGATGGCTACTCCCTTAAATTGTGGAGTAAAATTTTAATTACCTAAAAAAAA 664
consensus_4798#0 ---------------------
consensus_4798#1 AAAAAAAAAAAAAAAAAAAAA 685
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||