These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAGTTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGTTGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCATTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAATATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCATTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTATTTCAAAGCAGGGCAAGTTT] [+] EMBL CA765333 [TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAGTTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGTTGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCATTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAATATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCATTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTATTTCAAAGCAGGGCAAGTTT] consensusID : consensus_4804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGTTA] [-] EMBL CB663786 [GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGTTA] [-] EMBL CB655145 [GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTTTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATAAGAGGGTTGTCGTGGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4804#0 TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCAC 60 consensus_4804#1 -GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCAC 59 ********************** ***** ****************************** consensus_4804#0 TAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAG 120 consensus_4804#1 TAACTATATGATG----------------------------------------------- 72 ************* consensus_4804#0 TTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCAC 180 consensus_4804#1 ------------------------------------AAAACTGCAACTTGATCTTTGCAC 96 ************************ consensus_4804#0 CTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACC 240 consensus_4804#1 CTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACC 156 ************************************************************ consensus_4804#0 ACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGT 300 consensus_4804#1 ACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAG- 215 *********************************************************** consensus_4804#0 TGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACA 360 consensus_4804#1 ------------------------------CTGCTTTCGTGTTAATCTATTGAGGGCACA 245 ****************************** consensus_4804#0 TTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGT 420 consensus_4804#1 TTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGT 305 ************************************************************ consensus_4804#0 AGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATT 480 consensus_4804#1 AGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATT 365 ************************************************************ consensus_4804#0 ATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAAT 540 consensus_4804#1 ATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAAT 425 ************************************************************ consensus_4804#0 GACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCA 600 consensus_4804#1 GACAATCACTGTTA---------------------------------------------- 439 *********** ** consensus_4804#0 TTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAA 660 consensus_4804#1 ------------------------------------------------------------ consensus_4804#0 TATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCA 720 consensus_4804#1 ------------------------------------------------------------ consensus_4804#0 TTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTAT 780 consensus_4804#1 ------------------------------------------------------------ consensus_4804#0 TTCAAAGCAGGGCAAGTTT 799 consensus_4804#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||