cluster # 4804

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Oryza sativa
cluster # 4804 cluster # 4804 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4804#0 length = 799 sequences # 1

consensus_4804#1 length = 439 sequences # 2

consensusID : consensus_4804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence

                              [TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAGTTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGTTGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCATTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAATATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCATTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTATTTCAAAGCAGGGCAAGTTT]

[+] EMBL CA765333             [TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAGTTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGTTGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCATTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAATATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCATTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTATTTCAAAGCAGGGCAAGTTT]




>consensus_4804#0
TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCAC
TAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAG
TTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCAC
CTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACC
ACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGT
TGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACA
TTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGT
AGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATT
ATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAAT
GACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCA
TTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAA
TATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCA
TTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTAT
TTCAAAGCAGGGCAAGTTT

consensusID : consensus_4804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 439
fasta sequence

                              [GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGTTA]

[-] EMBL CB663786             [GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAATGACAATCACTGTTA]
[-] EMBL CB655145             [GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACTAACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGGGCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTTTACTATGTCAGCGGAAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATTATCTGTGTGGCAATAAGAGGGTTGTCGTGGCA                                          ]




>consensus_4804#1
GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCACT
AACTATATGATGAAAACTGCAACTTGATCTTTGCACCTTTTTGCCCTTTTTGGCTATTCT
ACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACCACTTTTAGCACTCAACTGGGTGCT
TGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGCTGCTTTCGTGTTAATCTATTGAGG
GCACATTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGG
AAAGTAGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTT
GAATTATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTG
TTAATGACAATCACTGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4804#0      TGGCTTACGGAAGCTGCACCACAATTTTACCAGTTCCGGACACCCAATCCTGCCCTTCAC 60
consensus_4804#1      -GGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCCCTTCAC 59
                       ********************** ***** ******************************

consensus_4804#0      TAACTATATGATGGTAAATTTATTTCTTTCTGTTTACTCATTATCAACCGTCTTCCATAG 120
consensus_4804#1      TAACTATATGATG----------------------------------------------- 72
                      *************                                               

consensus_4804#0      TTACAATTTTGTGAAGTTTATCCATGTTGATCGCAGAAAACTGCAACTTGATCTTTGCAC 180
consensus_4804#1      ------------------------------------AAAACTGCAACTTGATCTTTGCAC 96
                                                          ************************

consensus_4804#0      CTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACC 240
consensus_4804#1      CTTTTTGCCCTTTTTGGCTATTCTACTTATTACTTAAGGGTAGTTGGATGGAGTTTCACC 156
                      ************************************************************

consensus_4804#0      ACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAGT 300
consensus_4804#1      ACTTTTAGCACTCAACTGGGTGCTTGGATGGTTTGCACTTTTAGCACTTTTAAGGGTAG- 215
                      *********************************************************** 

consensus_4804#0      TGGAGGGTTTGCTCCGTTGTTACATACTAACTGCTTTCGTGTTAATCTATTGAGGGCACA 360
consensus_4804#1      ------------------------------CTGCTTTCGTGTTAATCTATTGAGGGCACA 245
                                                    ******************************

consensus_4804#0      TTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGT 420
consensus_4804#1      TTGGGAGGCAAAGGAGTACGTGCCGTGTAGACTGATAGTTCTACTATGTCAGCGGAAAGT 305
                      ************************************************************

consensus_4804#0      AGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATT 480
consensus_4804#1      AGCTGCCATAGCTTTATATCCTTCCTATTCCTATATTGCTGCAGTGTACTGCGTTGAATT 365
                      ************************************************************

consensus_4804#0      ATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAAT 540
consensus_4804#1      ATCTGTGTGGCAATATGAATGTTGTCGTGGCATTGTCAGAGAGGAATTATTTCTGTTAAT 425
                      ************************************************************

consensus_4804#0      GACAATCACTGNTACCCTGCGTCATGGTATATGCAACTCATGGGTATATTGGTTTCATCA 600
consensus_4804#1      GACAATCACTGTTA---------------------------------------------- 439
                      *********** **                                              

consensus_4804#0      TTTTTGNGGGGATAGTCTGATGCGATAGAATTTATTGGACTAAAGAGTAAAAGACCAAAA 660
consensus_4804#1      ------------------------------------------------------------
                                                                                  

consensus_4804#0      TATTTACTATTGGTAGAGCTTTATCTACTTGNCAATCAAGTAGCATCATTCTAATTTGCA 720
consensus_4804#1      ------------------------------------------------------------
                                                                                  

consensus_4804#0      TTGGACTCTTAACTTCAGNTCAAAANAAANGATCATGGGNCCTANATTCTCTAGCATTAT 780
consensus_4804#1      ------------------------------------------------------------
                                                                                  

consensus_4804#0      TTCAAAGCAGGGCAAGTTT 799
consensus_4804#1      -------------------