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Oryza sativa
cluster # 4808 cluster # 4808       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4808#0 length = 1041 sequences # 2  
consensus_4808#1 length = 429 sequences # 1  

consensusID : consensus_4808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1041
fasta sequence
                              [ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTA-CATCCCTTGCCATCTCCATCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCCTTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCATCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACCTCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTTTTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTTGAAGTGCTAATTGATTTGCTG]

[+] EMBL AK069676             [ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTA CATCCCTTGCCATCTCCATCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCCTTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCATCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACCTCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTTTTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTTGAAGTGCTAATTGATTTGCTG]
[+] EMBL CF279101             [        CTGCTCTCCTCTTCCCTCTTTTCCTTGCCGCCGCCGCCTCCACCAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTATCATCCCTTGCCATCTCCATCTCCGGCTTCCTCGCCATTGCCTTTTCTGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGA TTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_4808#0 ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCC TACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAG CTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTACATCCCTTGCCATCTCCA TCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTC TCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCT GGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCT TTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGC CAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCA GCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCC TTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCC AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCA TCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACC TCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTT TTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTT GAAGTGCTAATTGATTTGCTG



consensusID : consensus_4808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence
                              [ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF279100             [ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_4808#1 ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGA CCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAA AGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGC CTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTC GGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAA CCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCAC TGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAA AAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4808#0      ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCC 60
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      TACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAG 120
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      CTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTACATCCCTTGCCATCTCCA 180
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      TCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTC 240
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      TCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCT 300
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      GGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCT 360
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      TTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGC 420
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      CAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCA 480
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      GCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT 540
consensus_4808#1      -----------------ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT 43
                                       *******************************************

consensus_4808#0      CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG 600
consensus_4808#1      CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG 103
                      ************************************************************

consensus_4808#0      TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCC 660
consensus_4808#1      TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCC 163
                      ********************************************** *************

consensus_4808#0      TTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCC 720
consensus_4808#1      TTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCC 223
                      **** ******* ******************* *************** ***********

consensus_4808#0      AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCA 780
consensus_4808#1      AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCA 283
                      ******************************** ************** ************

consensus_4808#0      TCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT 840
consensus_4808#1      TCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT 343
                      ********************** *************************************

consensus_4808#0      CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACC 900
consensus_4808#1      CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCC 403
                      ********************************************************* **

consensus_4808#0      TCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTT 960
consensus_4808#1      TCAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 429
                      *** *  *  *    *                                            

consensus_4808#0      TTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTT 1020
consensus_4808#1      ------------------------------------------------------------
                                                                                  

consensus_4808#0      GAAGTGCTAATTGATTTGCTG 1041
consensus_4808#1      ---------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)