These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1041 fasta sequence [ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTA-CATCCCTTGCCATCTCCATCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCCTTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCATCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACCTCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTTTTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTTGAAGTGCTAATTGATTTGCTG] [+] EMBL AK069676 [ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTA CATCCCTTGCCATCTCCATCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCCTTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCATCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACCTCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTTTTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTTGAAGTGCTAATTGATTTGCTG] [+] EMBL CF279101 [ CTGCTCTCCTCTTCCCTCTTTTCCTTGCCGCCGCCGCCTCCACCAAATCCCCTACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAGCTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTATCATCCCTTGCCATCTCCATCTCCGGCTTCCTCGCCATTGCCTTTTCTGCCTCTCTTTTCTGTCGCCACAATCGCCTTCTCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCTGGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGA TTTTTTTTTGTTTTCTCTTTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGCCAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCAGCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGC ] consensusID : consensus_4808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF279100 [ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAATCCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGGTTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCCTTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCCAACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCATCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTTCCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4808#0 ATTCTCAACTGCTCTCCTCTTCCCTCTCTCCCTTGCCGCCGCCGCCTCCCACAAATCCCC 60 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 TACGGTCACCACCACTCGTTCGGCGTCTTCTCCGATGGTGGACTGGCGGCCGACCTCGAG 120 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 CTCCCTCGGCCGACCCCGGTGGAGAAGCTGCAGCCGCTATTACATCCCTTGCCATCTCCA 180 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 TCGCCGGCTTCCTCGCCATTGCCGGCGCCGCCTCTCTTTTCTGTCGCCACAATCGCCTTC 240 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 TCCGACCGCCAGGCCACCAGATCCGGCGACCATGGTGGCGTTGAGCAGCTAGGAGCAGCT 300 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 GGGAGCGCCGGTGAAGCAAGTCAACGATGAGATTGAGGGGATTTTTTTTTTGTTTTCTCT 360 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 TTTCTATTTTCAATTGAGAGAAGAGCGGAGGAGCGCGCGTGGCAGATCCGTATGAGAGGC 420 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 CAGCGACGGAGGAGCGTGGTACTGGCCGGCCGGCGGCAGAGGAGCCGGGAACGGCTGGCA 480 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 GCGATGAGTTTCTAGCTATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT 540 consensus_4808#1 -----------------ATGTTTGCCACATGTATATCAAATATAGTGTCATGGGAGGAAT 43 ******************************************* consensus_4808#0 CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG 600 consensus_4808#1 CCATCGCTGCTCTTGGACCAGCAAAGGGCAATGCATTGCCATTGGTGGGTGGAATCAAGG 103 ************************************************************ consensus_4808#0 TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAGATGTGGTGGATCC 660 consensus_4808#1 TTGGCTATTGTAGTGAAAGGCAAACTAGAGGCCCTCTTGTTGCAAAAATGTGGTGGATCC 163 ********************************************** ************* consensus_4808#0 TTAACTACACTGCGAGCCTCCCAGGCCTCACCACCATGAATTGCCCATCTATGCCCTCCC 720 consensus_4808#1 TTAATTACACTGGGAGCCTCCCAGGCCTCACCCCCATGAATTGCCCATTTATGCCCTCCC 223 **** ******* ******************* *************** *********** consensus_4808#0 AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAGAGGGGTTCCTTGTTCTGCACGTGCCCA 780 consensus_4808#1 AACCCAAGCCCCAGCTCGGTAAACCCTCGTAAAAGGGGTTCCTTGTTTTGCACGTGCCCA 283 ******************************** ************** ************ consensus_4808#0 TCGACCACTCCTGCAAACCGTTCTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT 840 consensus_4808#1 TCGACCACTCCTGCAAACCGTTTTCCTGCCAAACGCGGTTGAACTCATCGGTGTTTTTTT 343 ********************** ************************************* consensus_4808#0 CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCACC 900 consensus_4808#1 CCTTCATGGGATAGCACTGGTGATACCTAACTATATATATTTAGCATATAGTTTCTCCCC 403 ********************************************************* ** consensus_4808#0 TCATAGGACCATCCTATTTTCGCCTCCATTAACCGGCTTGGTTTTGCTGTGCCTTTTGTT 960 consensus_4808#1 TCAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 429 *** * * * * consensus_4808#0 TTGGATGGTGCATTGCATTGTGATTGCAAGGTTGCAGTATTTGCCGAATGAACTGTACTT 1020 consensus_4808#1 ------------------------------------------------------------ consensus_4808#0 GAAGTGCTAATTGATTTGCTG 1041 consensus_4808#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||